New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5140340 = | 82 (1.120) | 4 (0.060) | 3/234 | NT | 5.1% | intergenic (+4/+376) | PP_4524/PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator |
? | NC_002947 | 5140396 = | 71 (1.030) | intergenic (+60/+320) | PP_4524/PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator |
CGCAAACGTCAACCGCGTCGGCGCTGATTAACGACAAAGGCCGCTTCACCCGAGTGGGTGCAGCGGCCTTTTTGTGTCTGCTGATTTCTATTGCCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5140489‑5140340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacagGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCC > NC_002947/5140396‑5140543 CGCAAACGTCAACCGCGTCGGCGCTGATTAAAGACAAAGGCCGCTTCACCCGAGTGGGTGCAGCGGCCTTTTTGTGTCTGCTGATTTCTATTGCCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAG < 2:1211973/150‑1 ggCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACG > 2:566165/3‑146 GCCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACG < 1:566165/146‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGC > 1:1042807/1‑111 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGC < 2:1042807/111‑1 GTACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCA < 1:1721004/150‑1 GTACAGGCAATAGAAATCAGCAGACACAAAAAGACATCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCA > 1:1910551/1‑150 TACAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTCACCAGCGCTGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAG < 2:1340900/150‑1 CAGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCC > 1:1465157/1‑150 AGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCTTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCC < 1:1211973/150‑1 AGGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCC < 2:222252/150‑1 CGCAAACGTCAACCGCGTCGGCGCTGATTAACGACAAAGGCCGCTTCACCCGAGTGGGTGCAGCGGCCTTTTTGTGTCTGCTGATTTCTATTGCCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5140489‑5140340 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacagGCAATAGAAATCAGCAGACACAAAAAGGCCGCTGCACCCACTCGGGTGAAGCGGCCTTTGTCGTTAATCAGCGCCGACGCGGTTGACGTTTGCGCTGCTCTTCATCAGTCGGGATCGGCACCGGCTGCAAGGGTGGTGGGATCAGCCC > NC_002947/5140396‑5140543 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |