| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5257905 = | 71 (0.970) | 20 (0.310) | 11/220 | NT | 23.1% | intergenic (‑56/+88) | PP_4634/PP_4635 | alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase |
| ? | NC_002947 | 5257976 = | 70 (1.080) | intergenic (‑127/+17) | PP_4634/PP_4635 | alpha/beta family hydrolase/trans‑2‑enoyl‑CoA reductase | |||||
GGCTTCGAGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5258067‑5257905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGG > NC_002947/5257976‑5258122 GGCTTCGAGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCAC < 2:1660171/150‑1 TTCGAGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCG > 1:371624/1‑150 AGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAA < 1:1309831/150‑1 AGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAA < 2:1831755/150‑1 AGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAA < 1:1629413/150‑1 ACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAA > 1:1888517/1‑129 ACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAA < 2:1888517/129‑1 CAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAG > 2:1500364/1‑131 CAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAG < 1:1500364/131‑1 ACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGC < 1:154471/104‑1 ACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGC > 2:154471/1‑104 GGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGT > 1:1585279/1‑150 CTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTG > 2:692738/1‑141 CTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTG < 1:692738/141‑1 GCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTC > 2:1309519/1‑135 GCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTC < 1:1309519/135‑1 TCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACA > 2:921720/1‑89 TCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACA < 1:921720/89‑1 TCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCG > 2:358984/1‑150 TCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCAACTGCAGGCGGAGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATGGGTGGCCACGGCTTTGTCGTAGTCAACGTCAGCGCG > 1:1792530/1‑150 GGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGT > 1:730344/1‑123 GGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGT < 2:730344/123‑1 CCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAG > 1:1701675/1‑150 GCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGT > 1:630215/1‑150 CTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTA < 1:25791/117‑1 CTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTA > 2:25791/1‑117 CCACAGGTTCTCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCC < 1:461319/100‑1 CCACAGGTTCTCCCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCC > 2:461319/1‑100 CAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAA < 1:358984/150‑1 CTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTT < 2:1585279/150‑1 TCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTC < 2:1701675/150‑1 gtgcgCGCGAAGAGGCCGGTACGGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCAAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAG < 2:92932/145‑1 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAAC < 2:1762189/121‑1 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAAC > 1:1762189/1‑121 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACA < 2:848325/58‑1 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACA < 2:848713/58‑1 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACA > 1:848713/1‑58 CCGCGAAGAGGCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACA > 1:848325/1‑58 GCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGG > 2:191439/1‑150 GCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGC < 2:311186/128‑1 GCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGC > 1:311186/1‑128 GCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTC < 2:247466/89‑1 GCCGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTC > 1:247466/1‑89 GGCTTCGAGCGCGCTGACGTTGACTACGACAAAGACGTGGCCACCGATGTGAAGTTCGACTGCGTCGAGCTGTAATCGGGTAAGCCTGTACCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGTTCTCCCCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5258067‑5257905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccGGTACAGGCTTACCCGATTACAGCTCGACGCAGTCGAACTTCACATCGGTGGCCACGTCTTTGTCGTAGTCAACGTCAGCGCGCTCGAAGCCGAACAGGTTGAGGAACTGCTTCTTGTAACCGGCGTAGTCAGTCAGCTCGAACAGG > NC_002947/5257976‑5258122 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |