| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5474992 = | 75 (1.030) | 5 (0.070) | 4/230 | NT | 7.1% | intergenic (‑150/‑156) | proA/PP_4812 | gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase |
| ? | NC_002947 | 5475062 = | 62 (0.920) | intergenic (‑220/‑86) | proA/PP_4812 | gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase | |||||
TGCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5475148‑5474992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT > NC_002947/5475062‑5475209 TGCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAA < 1:5646/150‑1 TGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG < 1:972307/92‑1 TGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG > 2:972307/1‑92 GGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATT > 1:1115832/1‑114 GGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATT < 2:1115832/114‑1 TTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTGTCGTCCCCGCCTCTCCAGCCACGAACTGCCCCGC > 1:553837/1‑150 TTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTA > 1:979317/1‑116 TTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTA < 2:979317/116‑1 aAAAGGGCTGTCACTCCCAACATCCCCGTCCAATTCTGCCTCGATTAAGCCATTGATTGCTTTCATCCCTGCCTCGCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAG < 2:413834/149‑1 AAAGGGCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGG < 2:1271390/150‑1 GCCGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTG > 1:1719438/1‑150 CGGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT > 1:674176/1‑150 TGCGGGGCAGTTCGTGGCTGGAGAGGCGGGGATGATAGCAATGAATGGCTTAATCGAGGCTGAATTGGACGGTGATGTTGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5475148‑5474992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagggccgGCACTGCCAACATCACCGTCCAATTCAGCCTCGATTAAGCCATTCATTGCTATCATCCCCGCCTCTCCAGCCACGAACTGCCCCGCATGCCAGCCCTGCCCGACAGCTTTTTCGACCGCGACGCCCAGACCCTGGCCAAGGCCCTGCT > NC_002947/5475062‑5475209 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |