| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5671689 | 33 (0.450) | 4 (0.070) | 4/200 | NT | 11.5% | intergenic (+57/‑113) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | = 5671726 | 35 (0.600) | intergenic (+94/‑76) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5671521‑5671689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC < NC_002947/5671726‑5671584 CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGG < 2:1042148/150‑1CGTGGAGCCCGAGCGGCTGCGTCACTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCCAGCGGCGCAAGGCTATTGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCTACAGACACTCATTGTCTTGCGCGGTCTTGTGG < 1:1022673/150‑1 GGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATTGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGcg > 2:1306092/1‑148 CCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGC < 2:1616691/150‑1 GAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGT < 2:363601/150‑1 CGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA < 1:801751/150‑1 TGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGG > 1:1241650/1‑150 CGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAG < 2:757335/107‑1 CGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAG > 1:757335/1‑107 TCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGC < 2:1241650/150‑1 GATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAA < 2:479317/136‑1 GATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAA > 1:479317/1‑136 ACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGT < 1:1121354/60‑1 ACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGT > 2:1121354/1‑60 GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATG > 2:128115/1‑141 GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATG < 1:128115/141‑1 GAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGC < 1:238085/143‑1 GAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGC > 2:238085/1‑143 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGC < 2:1533084/146‑1 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGC > 1:1533084/1‑146 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGC > 1:820519/1‑108 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGC < 2:820519/108‑1 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCG < 2:1798126/35‑1 CCCGCGAACACCGGCGAAGCCGGTGCCAACGATCG > 1:1798126/1‑35 CCGCGAACACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 2:799929/1‑150 CCGCGAACACCGGCGAAGCCGGTGCAAAGGATAGGGCTGCTTGCGTCGCGGGCACACCCGCTCCCACAAGACCGCGCAAGACAAGGAGCTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC > 2:512147/1‑150 CGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5671521‑5671689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGTGCCAACGATCGGGTTGCTCTCTTCGCGGGCACGCCCGCTCCCACAAGACCGCGCAAGACAATGAGTTTTGCGGGCACATCAGGCTTGGGTGGATCGCAGCAGATGCGCCTCGATATCCTTGCGCCGC < NC_002947/5671726‑5671584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |