| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5681774 = | 78 (1.070) | 5 (0.070) | 5/240 | NT | 6.2% | coding (242/474 nt) | PP_4987 | putative Chemotaxis protein |
| ? | NC_002947 | 5681819 = | 77 (1.090) | coding (197/474 nt) | PP_4987 | putative Chemotaxis protein | |||||
TGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5681924‑5681774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCGTGCGGTCGCCCAACGGCA > NC_002947/5681819‑5681966 TGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTC > 1:194123/1‑150TGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTC < 2:148287/150‑1 GCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGC > 1:1450791/1‑144 GCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGC < 2:1450791/144‑1 CAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGC < 1:452843/132‑1 CAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGGCGC > 2:452843/1‑132 GGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACC > 2:1893306/1‑150 TCGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCGTGCGGTCGCCCAACGGC < 2:1799755/150‑1 CGAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCGTGCGGTCGCCCAACGGCA < 1:1280482/150‑1 CGAAACCGATCAACGGCAGGCGTTACTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGCTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCGTGCGGTCGCCCAACGGCA < 1:1612339/150‑1 TGGCCGAGTTGAGCGGGCAGCGTAACCTGGTGTGCCAGCATGGCGACCCCGCCTGGCACCTGGGGTGGATCGACTGGCGTCAGCAACGCCTGCCGTTGATCGGTTTCGAGGCCGCGTGCGGTGGTGAGACGCCGTGCGGCGAGCGGGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5681924‑5681774‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgAAACCGATCAACGGCAGGCGTTGCTGACGCCAGTCGATCCACCCCAGGTGCCAGGCGGGGTCGCCATGCTGGCACACCAGGTTACGCTGCCCGCTCAACTCGGCCACCGCCACGTTGGGCAACACCAGCGTGCGGTCGCCCAACGGCA > NC_002947/5681819‑5681966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |