New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5877040 =	85 (1.160)	4 (0.070)	3/200	NT	5.7%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877122 =	65 (1.110)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

ATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877209‑5877040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5877122‑5877270                                                                                                                                                                                                                                                                                                                                 ATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                           <  1:482034/150‑1     AGCGGGGACCATTTACCTGGGCAGTGAGCCGAACCTGTGCGATGTGTTCAAGCAGCCGGCTGACTGATCGCCTGGCGGGGCCTGTTCGCGGGTAAGCCCGCTCCTAGAGGGAGCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAG                                                                                                                                                                       >  2:533646/1‑150         GGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGG                                                                                                                                                                   >  2:7112/1‑150             CCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                           >  1:1501487/1‑138             CCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTA                                                                                                                                                                           <  2:1501487/138‑1              CATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              <  2:912908/150‑1              CATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              >  2:28968/1‑150              CATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              >  2:1413113/1‑150               ATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACC                                                                                                                                                             >  2:1408867/1‑150               ATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACC                                                                                                                                                             >  1:743311/1‑150                     CTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                       >  2:1115930/1‑150                     CTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                       >  1:715254/1‑150                                                              GACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAG                                                                                                                                                                          >  1:1292337/1‑90                                                              GACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAG                                                                                                                                                                          <  2:1292337/90‑1                                                                                 AGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCA                                                                                           >  2:1639607/1‑150                                                                                                      CCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCC                                                                      >  2:1656983/1‑150                                                                                                            CTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCA                                                                >  1:598382/1‑150                                                                                                             cACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCAT                                                               >  2:173348/2‑150                                                                                                                        CCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              >  1:1323288/1‑44                                                                                                                        CCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTAC                                                                                                                                                              <  2:1323288/44‑1                                                                                                                                                   TGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGC                         >  1:993565/1‑150                                                                                                                                                   TGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGC                         <  1:1639607/150‑1                                                                                                                                                    GTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCA                                                                                    >  2:868113/1‑90                                                                                                                                                    GTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCA                                                                                    <  1:868113/90‑1                                                                                                                                                      AGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAAC                      >  2:1750652/1‑150                                                                                                                                                       GGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACC                     >  2:1604243/1‑150                                                                                                                                                        GAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTACTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCC                    >  1:838660/1‑150                                                                                                                                                         AGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCC                   <  1:1630892/150‑1                                                                                                                                                               TTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAA             <  1:173348/150‑1                                                                                                                                                                    CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTT        >  2:1809465/1‑150                                                                                                                                                                    CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTT        <  1:495096/150‑1                                                                                                                                                                    CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTG                 <  1:1664877/141‑1                                                                                                                                                                    CCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTG                 >  2:1664877/1‑141                                                                                                                                                                      GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      <  1:1656983/150‑1                                                                                                                                                                      GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      <  2:482034/150‑1                                                                                                                                                                      GCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGC      <  1:1828877/150‑1                                                                                                                                                                         AACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                       >  1:1109530/1‑114                                                                                                                                                                         AACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCG                                       <  2:1109530/114‑1                                                                                                                                                                          ACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  <  2:598382/150‑1                                                                                                                                                                                                                                                                                                                                 ATGAAGCGGGGACCATTTACCTGGTCAGTGAGCCGAACCTGTTCTATGTGTTCAAGCAGCCGACTGACTGATCGCCTGTCAGGGCCTGTTCGCGGGTAAACCCGCTCCTACAGGGATCGCCACGGTTCCAGGCCGGTGGGGTACCTTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5877209‑5877040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGTCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5877122‑5877270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.