| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6076717 = | 60 (0.820) | 5 (0.080) | 5/226 | NT | 9.2% | intergenic (‑100/+39) | PP_5328/PP_5329 | phosphate ABC transporter permease/phosphate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 6076748 = | 44 (0.660) | intergenic (‑131/+8) | PP_5328/PP_5329 | phosphate ABC transporter permease/phosphate ABC transporter substrate‑binding protein | |||||
CGCAAGCGGGCCAGCAGGTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6076874‑6076717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCACCACCACCTGCTGGCCCGCTTGCGACAGCACCAGCTTGACG > NC_002947/6076748‑6076891 CGCAAGCGGGCCAGCAGGTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG < 2:1359808/150‑1CGCAAGCGGGCCAGCAGGTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG < 1:84553/150‑1 CAAGCGGGCCAGCAGGTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCATGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGC > 1:711399/1‑150 GTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG < 1:1190159/133‑1 GTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG > 2:1190159/1‑133 AAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGATGCC‑GTGCAGTG‑GCACCGGCCTCTTCTTAATTACTTACTTCTTT < 2:641447/150‑1 AGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGG‑G‑CAGTGGCACCGGCCTCTTCTTAATTACTTACTTCTTTG < 2:531107/150‑1 CTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTC > 1:347657/1‑124 CTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTC < 2:347657/124‑1 GCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG < 1:1121047/100‑1 GCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCG > 2:1121047/1‑100 AGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTCTTAATTACTTACTTCTTTGCAACGTTACCGGTAGGCGACAGGCCCAGGTCCGCCCGGGTCTGGTTCGCGGCTGTGGCCGGCAGCGGAATGTAGCCATCCTTCACCACCAC > 1:1400126/1‑150 TTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGC > 1:713694/1‑119 TTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGC < 2:713694/119‑1 ACT‑GC‑CCGGCCTCTTCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCACCACCACCTGCTGGCCCGCTTGCGACAGCAC < 1:531107/150‑1 CTCTTCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCACCACCACCTGCTGGCCCGCTTGCGACAGCACCAGCTTGACG > 1:1254003/1‑150 TCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCAC > 2:868357/1‑106 TCTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCAC < 1:868357/106‑1 CGCAAGCGGGCCAGCAGGTGGTGGTGAAGGATGGCTACATTCCGCTGCCGGCCAAAGTCGTCGACAAGACCCTGGCTGACCTGGGCCTGTCGCACACCGGTAACGTTGCAAAGAAGTAAGTAATTAAGAAGAGGCCGGTGCCACT‑GC‑CCGGCCTCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6076874‑6076717‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcTTAATTACTTACTTCTTTGCAACGTTACCGGTGTGCGACAGGCCCAGGTCAGCCAGGGTCTTGTCGACGACTTTGGCCGGCAGCGGAATGTAGCCATCCTTCACCACCACCTGCTGGCCCGCTTGCGACAGCACCAGCTTGACG > NC_002947/6076748‑6076891 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |