New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6158420	57 (0.780)	9 (0.130)	11/230	NT	14.8%	intergenic (+86/‑21)	PP_5401/PP_5739	hypothetical protein/hypothetical protein
	?	NC_002947	= 6158429	51 (0.750)					intergenic (+95/‑12)	PP_5401/PP_5739	hypothetical protein/hypothetical protein

ATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6158267‑6158420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgccgTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCG  <  NC_002947/6158429‑6158287                                                                                                                                                                                                                                                                                                            ATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCT                                                                                                                                                      >  1:1667104/1‑150  TTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTG                                                                                                                                                     >  1:1101030/1‑150   TCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCACTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGC                                                                                                                                                    <  2:1774331/150‑1                        AAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGGGTT                                                                                                                              <  2:1690321/150‑1                                           TTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGGGT                                                                                                                               >  1:1449496/1‑130                                           TTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGGGT                                                                                                                               <  2:1449496/130‑1                                                                              AGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGG                                                                                                                                 <  1:642188/93‑1                                                                              AGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCGTGCTGCGGC‑CGGCAGG                                                                                                                                 >  2:642188/1‑93                                                                                                                              GCTGCACAATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTA                         >  1:1199754/1‑149                                                                                                                              GCTGCACAATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTA                         <  2:1199754/149‑1                                                                                                                                     AATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCTGTACACCTTGAGAAC                                                                       >  1:1878836/1‑96                                                                                                                                     AATCCTTGGAAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAAC                                                                       <  2:1878836/96‑1                                                                                                                                              AAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAA                                                                 >  1:806176/1‑93                                                                                                                                              AAGAACCCTGCCG‑GCCGCAGCACGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAA                                                                 <  2:806176/93‑1                                                                                                                                                    CCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCG  >  1:698742/1‑150                                                                                                                                                    CCTGCCGTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCG  >  2:148032/1‑150                                                                                                                                                                                                                                                                                                            ATTCATACGTCGGGCACGTTCGCAAATTGCTGGGAGAGATGATTAATAATGGCCCACCTTTTGACTGAGTAGCTACCAGGCGCTTTCGGGTTCTCAAGGTGTACTGATTGATCAGTAAGCGCGACGCTGCACAATCCTTGGAAGAACCCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6158267‑6158420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgccgTGCTGCGGC‑CGGCAGGGTTCTTCCAAGGATTGTGCAGCGTCGCGCTTACTGATCAATCAGTACACCTTGAGAACCCGAAAGCGCCTGGTAGCTACTCAGTCAAAAGGTGGGCCATTATTAATCATCTCTCCCAGCAATTTGCG  <  NC_002947/6158429‑6158287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.