| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2085566 | 47 (0.640) | 6 (0.080) | 5/240 | NT | 9.3% | intergenic (+232/‑363) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | = 2087791 | 72 (1.020) | intergenic (+561/+357) | PP_1865/aroH | transposase/3‑deoxy‑7‑phosphoheptulonate synthase | |||||
GCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAA > NC_002947/2085420‑2085712 | gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGa > 2:1693888/1‑150 (MQ=32)gcgcgcGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGACCGAGCGCAGGTCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCACTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGa > 1:207078/1‑150 (MQ=12) gTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGAcc > 2:973101/1‑150 (MQ=32) gTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGAcc > 2:1066971/1‑150 (MQ=32) aGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTTAGGGGACCCCGGagc > 2:112058/1‑150 (MQ=17) gCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGagcgt < 2:1412860/150‑1 (MQ=32) aTGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGagcgtagc > 1:1365254/1‑150 (MQ=31) cAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg < 1:1243748/150‑1 (MQ=11) cAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAg < 2:919479/150‑1 (MQ=11) aggaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAgg < 1:1202047/150‑1 (MQ=31) aggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGTGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGa < 2:1254064/150‑1 (MQ=17) gCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGc > 2:671387/1‑150 (MQ=32) cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCg > 1:1484304/1‑150 (MQ=32) cGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCg > 1:1553284/1‑150 (MQ=32) cAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGATCACCCGGGAGCAAGCCC‑GGAGTGAGGGGACTCCGGATTTTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCt > 1:434754/1‑150 (MQ=11) aGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAG > 1:840678‑M1/1‑97 (MQ=255) aGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAG < 2:840678‑M1/97‑1 (MQ=255) gggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCA‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCttt < 1:1295595/150‑1 (MQ=25) ggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTg < 1:1642914/150‑1 (MQ=35) ggCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTg < 1:449215/150‑1 (MQ=35) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTg < 1:1746997/150‑1 (MQ=35) agggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTg > 2:1586902/1‑150 (MQ=35) gggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTgg > 2:112811/1‑141 (MQ=35) gggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTgg < 1:112811/141‑1 (MQ=35) gggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg < 1:500210/150‑1 (MQ=35) ggaggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGc > 1:754836/1‑150 (MQ=35) ggTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCAc < 2:754836/150‑1 (MQ=35) gggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCaa > 2:588402/1‑150 (MQ=34) ggCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCaaa < 1:671387/150‑1 (MQ=35) gCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAg > 2:1683820/1‑150 (MQ=34) tGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAccc > 1:1169998/1‑149 (MQ=35) tGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAAccc < 2:1169998/149‑1 (MQ=35) cGTCAAGCGCTGGGCCCCAGGATGCAGACGTGAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTGGGTTACTTTGGTCGTGGCCAAAGTAAccaaagcc < 1:973101/150‑7 (MQ=11) aaGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAgg > 1:1817383/1‑150 (MQ=35) gcgcTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGc < 1:382986/150‑1 (MQ=35) ccccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGt < 2:601572/150‑1 (MQ=35) cccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACTAAAGTAACCCGCCGGAAGGGCGGAAAGGTg > 1:1402122/1‑150 (MQ=25) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCtt < 1:1365409/99‑1 (MQ=38) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCtt > 2:1365409/1‑99 (MQ=37) ccAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGa > 2:1344806/1‑150 (MQ=35) aggaggGGGCCGGCAGCGCGTTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATTAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTGCCCCGCCGGAAGGGCGGAAAGGTGAAt < 1:1066971/150‑1 (MQ=11) gATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAg > 1:1044713/1‑150 (MQ=35) aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACt > 2:519601/1‑102 (MQ=38) aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACt < 1:519601/102‑1 (MQ=38) cgGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa < 2:344470/150‑1 (MQ=39) cgGTCCTCCCGCTGGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGtgaa < 1:1267907/150‑1 (MQ=255) tcctccCGGGAGCAAGCCC‑GGAGgaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgccc > 1:642486‑M1/1‑23 (MQ=255) tcctccCGGGAGCAAGCCC‑GGAGgaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgccc < 2:642486‑M1/77‑55 (MQ=255) ctccCGGGAGCAAGCCC‑GGAGgaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcactta > 2:1503723‑M1/1‑21 (MQ=255) ctccCGGGAGCAAGCCC‑GGAGgaccgcgctgcaggccccatcctggg > 2:1107624‑M1/1‑21 (MQ=255) ctccCGGGAGCAAGCCC‑GGAGgaccgcgctgcaggccccatcctggg < 1:1107624‑M1/47‑27 (MQ=255) tccCGGGAGCAAGCCCGGGAGgaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgctta > 2:1230762‑M1/1‑21 (MQ=255) aGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACtt < 1:651384/150‑1 (MQ=39) aaGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg > 2:1531027/1‑75 (MQ=255) aaGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTgg < 1:1531027/75‑1 (MQ=40) aGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGAtg < 2:1817383/150‑1 (MQ=38) cc‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGATGTAAGATCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGa < 1:1693888/150‑1 (MQ=14) ggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatgcccgtcacctccctccgcaagccctgcgctcggcctcctgaagtcgcaatctgcgtcgcctgaactaccgcgcgcttagaagcaaaagccaaagc < 1:1515602‑M1/150‑147 (MQ=255) | GCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTGGGCCCCAGGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCC‑GGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGCTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTGCATCGTGAATGAATGTCTACTTGATGTGAAA > NC_002947/2085420‑2085712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |