New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2050638	51 (0.700)	5 (0.100)	5/174	NT	13.2%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2050674	30 (0.590)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

ACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAC  >  NC_002947/2050526‑2050821                                                                                                                                                     |                                                                                                                                                    aCAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGGTGTCACAGAGCCCGAGGACGGCGGGGCGCCTg                                                                                                                                                    <  2:623017‑M2/150‑2 (MQ=255)           aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                          >  1:1887939‑M2/1‑139 (MQ=255)           aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGCGACGACACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                          >  2:68052‑M2/1‑139 (MQ=255)           aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTATGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggg                                                                                                                                          >  1:34157‑M2/1‑139 (MQ=255)            tcgtcgTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTGCTACGGGGATGTCACAGAGCCCGAATACGGCGGGGTGCCTgtaagaccgggt                                                                                                                                         >  2:964466‑M2/1‑138 (MQ=255)             cgtcgtCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggtt                                                                                                                                        <  1:889939‑M2/150‑14 (MQ=255)                        atgatgCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaag                                                                                                                             >  2:889939‑M2/1‑126 (MQ=255)                                    cGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacag                                                                                                                 >  2:135449‑M2/1‑114 (MQ=255)                                        ggcggcGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTAGGGGGATTTCACAGAGCCCGAAGACGGCGGGGGGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTa                                                                                                             >  1:1010431/1‑150 (MQ=255)                                        ggcggcGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTa                                                                                                             <  1:7199/150‑1 (MQ=255)                                         gcggcgTAGTTTACGCGACTGTGGGGCGGTGTTCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTAc                                                                                                            <  1:1663714/150‑1 (MQ=255)                                          cggcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCACATGCTCGGGGGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGATTCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTAca                                                                                                           >  1:1506206/1‑149 (MQ=38)                                            gcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCCCGTGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCa                                                                                                         <  1:1085724/150‑1 (MQ=255)                                               tAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCaaaa                                                                                                      >  1:475228/1‑150 (MQ=255)                                                   ttACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCAt                                                                                                  <  1:1707381/150‑1 (MQ=255)                                                       gcgACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgg                                                                                                                                           >  2:946586‑M2/1‑95 (MQ=255)                                                       gcgACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgg                                                                                                                                           <  1:946586‑M2/105‑11 (MQ=255)                                                               ggggCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttc                                                                                                                                       <  1:178169‑M2/101‑15 (MQ=255)                                                               ggggCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttc                                                                                                                                       >  2:178169‑M2/1‑87 (MQ=255)                                                                gggCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTACTACGGGGATGTCACAGAGCCCGAAGACGGAGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGAAAGGACAGGTTACGCAAAACAATCAATCGTggtact                                                                                     >  1:915783/1‑145 (MQ=38)                                                                  gCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCttcttc                                                                                   >  2:1888202/1‑150 (MQ=255)                                                                      tgtgCAGCCTGTGCGGGCCTCTTCGCCGGGGAACCCGCTCCTACGGGGATGTGACAGAGGCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCAAAGAGGCCCGCACACGTTACCCCAAACCATCAACAGTGCTTCTtcatca                                                                               >  2:1874439/1‑150 (MQ=255)                                                                       gtgCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAg                                                                              >  1:156223/1‑150 (MQ=255)                                                                              cTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttc                                                                                                                                       <  1:1696966‑M2/86‑15 (MQ=255)                                                                              cTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttc                                                                                                                                       >  2:1696966‑M2/1‑72 (MQ=255)                                                                                gtgCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtg                                                                     <  1:802945‑M2/150‑81 (MQ=255)                                                                                   cgtgcgtctTCGGGGGTGACCCCGCTGCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCCCCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                  <  2:184514/144‑1 (MQ=255)                                                                                   cGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGTGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                  <  1:623017/150‑1 (MQ=255)                                                                                      gCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGtt                                                               >  1:1466820/1‑150 (MQ=255)                                                                                        gtctTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTaa                                                             >  2:1327961/2‑150 (MQ=255)                                                                                           ttCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacag                                                                                                                 <  2:980583‑M2/95‑37 (MQ=255)                                                                                           ttCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacag                                                                                                                 >  1:980583‑M2/1‑59 (MQ=255)                                                                                           ttCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGt                                                                <  1:884890/144‑1 (MQ=255)                                                                                           ttCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGt                                                                >  2:884890/1‑144 (MQ=255)                                                                                            tCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTc                                                         <  1:1313832/150‑1 (MQ=255)                                                                                            tCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTc                                                         >  1:679208/1‑150 (MQ=255)                                                                                              gcgGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTccc                                                       >  1:864943/1‑150 (MQ=255)                                                                                              gcgGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTccc                                                       <  2:1466820/150‑1 (MQ=255)                                                                                                   tGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTcccgcccg                                                  >  2:1938007/1‑150 (MQ=255)                                                                                                       ccttctctTACGGGGAGGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCGCCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggc                                              <  2:600634/146‑1 (MQ=255)                                                                                                        ccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgcc                                                                              >  1:65241‑M2/1‑46 (MQ=255)                                                                                                        ccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgcc                                                                              <  2:65241‑M2/117‑72 (MQ=255)                                                                                                         cGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgattt                                            <  1:1104373‑M2/150‑106 (MQ=255)                                                                                                                  ggggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                  >  1:354841/1‑119 (MQ=255)                                                                                                                  ggggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAg                                                                  <  2:354841/119‑1 (MQ=255)                                                                                                                  ggggATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATa                                   <  2:475228/150‑1 (MQ=255)                                                                                                                      aTGTCACCGAGACCCGTGACGGCGGGGTGACTGTCGGGGCGGTTTCGCCCGCGAAGGGGCCCGCACAGTTTACGCAAAACCATCACTCGTGCTGCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGc                               <  1:639557/150‑1 (MQ=255)                                                                                                                                   cGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGaa                  >  1:554891/1‑150 (MQ=255)                                                                                                                                        aCGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgcgg                                                                        <  1:1901179/91‑1 (MQ=255)                                                                                                                                        aCGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgcgg                                                                        >  2:1901179/1‑91 (MQ=255)                                                                                                                                         cggcggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAacgcac            <  2:156223/150‑1 (MQ=255)                                                                                                                                          ggcggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGa                                     >  2:761863/1‑124 (MQ=255)                                                                                                                                          ggcggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGa                                     <  1:761863/124‑1 (MQ=255)                                                                                                                                            cggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGt                                                                                                               >  2:1746331/1‑48 (MQ=255)                                                                                                                                            cggGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGt                                                                                                               <  1:1746331/48‑1 (MQ=255)                                                                                                                                                gTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttttccctgttcaaggccgaagtgcgcggcgtaaagccgat     >  2:802945‑M2/1‑6 (MQ=255)                                                                                                                                                gTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGc     >  1:1642737/1‑150 (MQ=255)                                                                                                                                                   ccTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCcac  >  1:1155459/1‑150 (MQ=255)                                                                                                                                                     tGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGt                                                                                           <  2:1295392/59‑1 (MQ=255)                                                                                                                                                     tGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGt                                                                                           >  1:1295392/1‑59 (MQ=255)                                                                                                                                                     |                                                                                                                                                    ACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAC  >  NC_002947/2050526‑2050821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.