New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2436499 =	14 (0.190)	3 (0.040)	3/238	NT	26.7%	intergenic (+34/‑625)	PP_2134/fadB	transposase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase
	?	NC_002947	= 6038047	3 (0.040)					intergenic (+193/+24)	argB/PP_5290	acetylglutamate kinase/transposase

CACAAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGG  >  NC_002947/6037901‑6038108                                                                                                                                                   |                                                              cagaaaGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTgggcgg                                                            >  1:1937788/4‑150 (MQ=255) cacaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCTAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            >  1:576315‑M2/1‑147 (MQ=255) cacaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            <  2:490339‑M2/150‑4 (MQ=255) cacaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            >  1:1753035‑M2/1‑147 (MQ=255)  acaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcggg                                                           >  1:151232‑M2/1‑146 (MQ=255)  acaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcggg                                                           <  1:676701‑M2/150‑5 (MQ=255)  acaAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTCGGGcggg                                                           >  2:1264719‑M2/1‑146 (MQ=255)   caAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTGCTCCCCATCATTTGAGACTGCCCGTCAGTTTGGGcgggc                                                          <  2:1286407‑M2/150‑6 (MQ=255)       ggAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCg                                                      >  2:329528/1‑150 (MQ=38)            tCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCa                                                 <  1:562372/150‑1 (MQ=33)              cccATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGc                                               <  1:490339/150‑1 (MQ=32)               ccATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGcc                                              >  1:1128373/1‑150 (MQ=31)                    tAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            >  1:196993‑M2/1‑128 (MQ=255)                    tAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            <  2:196993‑M2/131‑4 (MQ=255)                              tATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGCCCAAACTGAcgggcagtatccaatgctggggagaaattctc                               >  2:1168797‑M2/1‑118 (MQ=255)                                           aaaTTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            <  2:1381045‑M2/108‑4 (MQ=255)                                           aaaTTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcgg                                                            >  1:1381045‑M2/1‑105 (MQ=255)                                                                                 ccTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcggg                                                           >  2:1581556‑M2/1‑67 (MQ=255)                                                                                 ccTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGcggg                                                           <  1:1581556‑M2/71‑5 (MQ=255)                                                                                                                     cccAGCATTGGATACTGCCCGTCAGTTTGGGcgggcagtatccaatgctggggagaaattctctggcacgctgactcgtacctcgaggttgc  >  2:1720427‑M2/1‑31 (MQ=255)                                                                                                                     cccAGCATTGGATACTGCCCGTCAGTTTGGGcgggcagtatccaatgctggggagaaattctctggcacgctgactcgtacctcgaggttgc  <  1:1720427‑M2/92‑62 (MQ=255)                                                                                                                                                   |                                                              CACAAAGGAAATCCCCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGCAGCCCCAGCCTCAGCTGGCCGGCTTGGCACCTCCGGTATATATCTCGG  >  NC_002947/6037901‑6038108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.