| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4537593 = | NA (NA) | 9 (0.130) | 4/242 | NT | 69.8% | coding (884/1533 nt) | PP_4025 | transposase |
| ? | NC_002947 | = 4626705 | 4 (0.050) | coding (845/1533 nt) | PP_4091 | transposase | |||||
ATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATCGCAATGGATCACCGGGCTTTCCAGCAGGCGGTCA > NC_002947/4626559‑4626854 | aTTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGgtgt < 2:1907927/150‑1 (MQ=32) tACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAAt < 1:446339/150‑1 (MQ=32) gcagAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGa > 2:1367857/4‑150 (MQ=14) tcGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGaa < 2:1573253/149‑1 (MQ=17) gAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACa < 1:44958/150‑1 (MQ=31) gCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGgctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggc > 1:1298699‑M2/1‑44 (MQ=255) gCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGgctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgttcggc < 2:1298699‑M2/143‑100 (MQ=255) ccTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGtgggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaat < 2:1788363‑M2/150‑109 (MQ=255) cTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGagggctatcgcggttacgtgatgatcgatgattacgccggtcacaacgcgttggcgctacagccgggcgtt < 1:517658‑M2/112‑72 (MQ=255) cTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGagggctatcgcggttacgtgatgatcgatgattacgccggtcacaacgcgttggcgctacagccgggcgtt > 2:517658‑M2/1‑41 (MQ=255) cTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaatt < 1:1535896‑M2/150‑110 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGgctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtc < 1:815593‑M2/150‑111 (MQ=255) tCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattc < 1:278025‑M2/150‑111 (MQ=255) gCACCTCCTGCGCGCGGCTGGTGGgctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgc > 2:815593‑M2/1‑24 (MQ=255) ggtggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagag > 2:278025‑M2/1‑5 (MQ=255) tggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 2:1855765‑M2/1‑3 (MQ=255) tggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 1:1113278‑M2/1‑3 (MQ=255) tggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 2:339220‑M2/1‑3 (MQ=255) tggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcg > 2:608945‑M2/1‑3 (MQ=255) ggagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcgg > 1:873232‑M2/1‑2 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagggcaagagcggt < 1:1689909‑M2/150‑150 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagg < 1:252558‑M2/139‑139 (MQ=255) gagggctatcgcggttacgtgatgaccgatgattacgccggttacaacgcgttggcgctacagccgggcgttgaacgactggcgtgcatggcgcatgtccggcgtaaattcgtcgaagcgcagaaggtgcagcctaagg > 2:252558‑M2/1‑1 (MQ=255) | ATTTACGCCGAACATGCGCCATGCACGCCAGTCGTTCAACGCCCGGCTGTAGCGCCAACGCGTTGTAACCGGCGTAATCATCGGTCATCACGTAACCGCGATAGCCCTCCAGCAGGCGCAGCGGCACCTCCTGCGCGCGGCTGGTGGTGTAATCGAACAGCACGACTTGTCGATCAGGCGGGCCACTGGCCTGCACCCACATCCAGGATTGACTGGTCGGATCACGATCCGGCTCTTTGAGCACCTGCACGCGAGTTTCATCGCAATGGATCACCGGGCTTTCCAGCAGGCGGTCA > NC_002947/4626559‑4626854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |