Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,140,038 | G→C | 9.7% | G396A (GGT→GCT) ‡ | cusB → | CzcB family copper RND transporter membrane fusion protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,140,038 | 0 | G | C | 9.7% | 114.4 / 5.9 | 42 | G396A (GGT→GCT) ‡ | cusB | CzcB family copper RND transporter membrane fusion protein |
Reads supporting (aligned to +/- strand): ref base G (20/17); new base C (2/2); total (23/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.05e-01 |
GACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGC > NC_002947/6139896‑6140181 | gACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGAGCGACTCCGAAGCAAGCCTCAAGGGTAttgag > 1:640658‑M2/1‑145 (MQ=255) gACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCAACGGGGCAATTCCTGATCGACTCCGAAGCAAGCCGCAAGGGTAttgag > 1:449744‑M2/1‑145 (MQ=255) cAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAAAGAAGTTTAAGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGCAAATCGTGGCATTCCGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGTTATTGAGGcc > 1:1806805/1‑150 (MQ=255) aGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac < 1:1280753/150‑1 (MQ=255) ggCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac > 1:475217/1‑149 (MQ=255) ggCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGccac < 2:475217/149‑1 (MQ=255) ccGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATc < 1:1794022/150‑1 (MQ=255) atctccAATATAGGTCGTGCTAGCCCAGGAGAACGGCTGCCACTTCTCAATCTTCAAAGGCCTGCAGGCCGGGCAGAAACTCGTGGCATCCTTGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATc < 1:927338/146‑1 (MQ=255) cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa < 1:1075130/150‑1 (MQ=255) cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa > 1:302978/1‑150 (MQ=255) cccAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGa < 2:656930/150‑1 (MQ=255) cAATAGAGGTGGTGCTAGGCAAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGGCTGCAGGCCGGGCAGAAAGTCGTGGCATCAGGGCAATTCCTGATCGACTCCGAAGAAAGACTCAAGGGTATTGAGGCCACAAGAGCAtagagat > 2:927338/1‑144 (MQ=255) aTAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCa > 1:1470994/1‑150 (MQ=255) ggtgCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCgcctgc < 1:1208491/150‑1 (MQ=255) aCGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTACTGAGGCTACCACAGCATCGGTTTCACCGCCTGCCTCGCAAGCACCTGAAc < 2:221627/150‑1 (MQ=255) ggcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAAccc > 2:360023/1‑150 (MQ=255) gcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGt < 1:1889555/95‑1 (MQ=255) gcggcCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGt > 2:1889555/1‑95 (MQ=255) tCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcggagtcgatcaggaattgcccggatgccac > 1:1553627‑M2/1‑87 (MQ=255) tCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcggagtcgatcaggaattgcccggatgccac < 2:1553627‑M2/131‑45 (MQ=255) gCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCAc < 2:1202097/112‑1 (MQ=255) gCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCAc > 1:1202097/1‑112 (MQ=255) ttGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcgga < 1:1401226‑M2/96‑18 (MQ=255) ttGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAATACCCttgaggcttgcttcgga > 2:1401226‑M2/1‑79 (MQ=255) tGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATg < 1:916347/150‑1 (MQ=255) cTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTAttgag > 2:456940‑M2/1‑70 (MQ=255) cTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTAttgag < 1:456940‑M2/75‑6 (MQ=255) gCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGAAAGACTGGCGGGGAGTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACaa > 2:1719593/1‑150 (MQ=255) gAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAgg < 2:302978/150‑1 (MQ=255) gTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAg > 1:162673/1‑150 (MQ=255) tCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCgtgt > 1:350319/1‑122 (MQ=255) tCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCgtgt < 2:350319/122‑1 (MQ=255) ccGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCa < 1:1329770/150‑1 (MQ=255) tGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGc > 1:90915/1‑150 (MQ=255) tGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGc > 2:1857449/1‑150 (MQ=255) gATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAACCGCAGGCACCCAGCTGACCATCGACCACGGGcc > 1:499946/1‑150 (MQ=255) caCTCCGAAGAAAGCCTTAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGTACCCATCTTACCATCGACCACGGGCCATTc < 2:689036/149‑1 (MQ=255) tCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTc > 2:1198425/1‑150 (MQ=255) cGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCAc > 1:564805/1‑150 (MQ=255) cGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCATGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCAc > 2:1927436/1‑150 (MQ=255) tCAAGGGTCTTTACGATACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGc < 2:1806805/150‑1 (MQ=255) tCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGc > 1:568619/1‑150 (MQ=255) | GACCAAGGCCGTTTCCGCCCAATAGAGGTGGTGCTAGGCCAGGAGAACGGCGGCCAGGTCGCAATCTTGAAAGGCCTGCAGGCCGGGCAGAAAGTCGTGGCATCCGGGCAATTCCTGATCGACTCCGAAGCAAGCCTCAAGGGTATTGAGGCCACCACAGCATCGGATTCACCGCCTGCCTCGCAAGCACCTGAACCCGAACTGCACCAAGCGGATGGCCGTGTCGTACAAATCGAAGGCACCCAGCTGACCATCGACCACGGGCCATTCGTCACCTTGGGAATGC > NC_002947/6139896‑6140181 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |