| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,189,041 | A→G | 8.0% | intergenic (+25/+17) | PP_1038 → / ← tatC‑I | hypothetical protein/Sec‑independent protein translocase protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,189,041 | 0 | A | G | 8.0% | 238.9 / 8.9 | 88 | intergenic (+25/+17) | PP_1038/tatC‑I | hypothetical protein/Sec‑independent protein translocase protein |
| Reads supporting (aligned to +/- strand): ref base A (39/41); new base G (4/3); total (43/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.63e-01 | |||||||||||
GAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCCGGCGG > NC_002947/1188894‑1189183 | gAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCAcc > 2:1458153/1‑149 (MQ=255) gTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCcgc > 2:1448752/1‑150 (MQ=255) gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCGTGCCCGCGaa < 2:1513596/150‑1 (MQ=255) gAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaa > 2:887096/1‑150 (MQ=255) aaGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATGCTTGTTAGCTGGGTAG‑CGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa < 2:1141645/150‑1 (MQ=255) aaGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa < 1:332783/150‑1 (MQ=255) aaGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGaaa < 2:81807/150‑1 (MQ=255) ggTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAgg > 1:1075621/1‑150 (MQ=255) ggAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACCGCTATTCGACGGCACGCCCTCTTAAGGGcc < 2:1443182/150‑1 (MQ=255) gAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCGGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc < 1:378436/150‑1 (MQ=255) tggtggtggCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGcc < 2:1710318/145‑1 (MQ=255) tggtggtggCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGcc > 1:1710318/1‑145 (MQ=255) gtggtggCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAAt > 2:1525659/1‑150 (MQ=255) tggCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAg < 2:1805848/150‑1 (MQ=255) cGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAAt < 2:1495616/150‑1 (MQ=255) gCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTAAG‑AAGTCTGGCGGCTCGCCGAGTTGTAGAAAACATCACGGCTATTCGCGGGCCCGCCCGCGAAAGGGCCCTACAATCCAGCCACAAtctc < 2:1768707/150‑1 (MQ=255) cTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTAGG‑AAGTCTGGCGGCTCGCCGAGGTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTcc > 2:118283/1‑150 (MQ=255) ttGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc < 1:1448752/150‑1 (MQ=255) ttGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc < 2:1538954/150‑1 (MQ=255) gCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTgg > 1:807004/1‑150 (MQ=255) gtcgCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc > 2:491041/1‑150 (MQ=255) cTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCt > 1:1403202/1‑150 (MQ=255) tCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACa > 1:677784/1‑150 (MQ=255) aaGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAt‑t < 1:1541395/150‑1 (MQ=255) aGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGCCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑Tc < 1:1557205/150‑1 (MQ=255) gCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCTGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCg < 2:1423751/134‑1 (MQ=255) gCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCg > 1:1423751/1‑134 (MQ=255) cAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCca < 2:1075621/150‑1 (MQ=255) aCCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCa < 2:1900182/150‑1 (MQ=255) aCCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCa < 2:677784/150‑1 (MQ=255) aCCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCCCCGACTGCTTCGATGT‑GCCACATGCCa < 2:716634/150‑1 (MQ=255) cccGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTcc > 2:663031/1‑112 (MQ=255) cccGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTcc < 1:663031/112‑1 (MQ=255) cccGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc < 1:1829772/127‑1 (MQ=255) cccGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc > 2:1829772/1‑127 (MQ=255) cccGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAg < 1:887096/150‑1 (MQ=255) aCGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCcgc > 2:740046/1‑76 (MQ=255) aCGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCcgc < 1:740046/76‑1 (MQ=255) gagaCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc > 2:99588/1‑109 (MQ=255) gagaCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGc < 1:99588/109‑1 (MQ=255) gagaCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACaa < 1:484161/138‑1 (MQ=255) gagaCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACaa > 2:484161/1‑138 (MQ=255) gagaCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAAcccc > 1:507353/1‑150 (MQ=255) aCGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCAtc < 1:1023972/150‑1 (MQ=255) aGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAAtc > 2:883488/1‑94 (MQ=255) aGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAAtc < 1:883488/94‑1 (MQ=255) aGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGaa < 1:491041/150‑1 (MQ=255) gCCTATG‑AAGTCTGGCGGCTCGCCGCCCATTTGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAAc < 1:1458153/150‑1 (MQ=255) ccTATG‑AAGTATGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACa > 2:1682338/1‑150 (MQ=255) cTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAg < 2:507353/150‑1 (MQ=255) tATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAga > 1:701409/1‑149 (MQ=255) tATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGc < 1:1525659/150‑1 (MQ=255) tG‑AAGTCTGGTGGCTCGTTGAGTTCTAGACCGCATCACAGCTATTCGCGTCCACTCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCCCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCCTCTCGAACAGCAc < 2:464745/150‑1 (MQ=255) g‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCAcc > 1:1768556/1‑150 (MQ=255) aaGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc < 2:295244/104‑1 (MQ=255) aaGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGc > 1:295244/1‑104 (MQ=255) gcTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc < 2:384044/58‑1 (MQ=255) gcTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGccc > 1:384044/1‑58 (MQ=255) gcTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCAc > 2:1827632/1‑150 (MQ=255) cTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACt > 1:1311107/1‑150 (MQ=255) cGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCAACAAGGTCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGc < 1:118283/150‑1 (MQ=255) ccGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCa < 1:1827632/150‑1 (MQ=255) cGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAg > 1:1110308/1‑150 (MQ=255) cGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAg > 2:1207901/1‑150 (MQ=255) ttCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAAcc > 1:415052/1‑112 (MQ=255) ttCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAAcc < 2:415052/112‑1 (MQ=255) ttCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAAc > 2:670221/1‑111 (MQ=255) ttCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAAc < 1:670221/111‑1 (MQ=255) cTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGt > 2:301521/1‑150 (MQ=255) cTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGt > 1:195656/1‑150 (MQ=255) tAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTc > 2:1236398/1‑150 (MQ=255) tAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGACCTACAATCTAGACAAGATCTCTTTGCCTTTATCC‑GTCGATTAGACCTATTAACAGGCGTCGAACCCGAGCGCGAACAGCACCCACATCGGCACTGCCAgatcggaa > 2:1673932/1‑143 (MQ=255) aGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCt < 1:383508/150‑1 (MQ=255) gAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGt < 1:1385885/147‑1 (MQ=255) gAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGt > 2:1385885/1‑147 (MQ=255) tCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAac > 1:1721128/1‑150 (MQ=255) ggCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCAcc < 1:565744/113‑1 (MQ=255) ggCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAAGCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCAcc > 2:565744/1‑113 (MQ=255) gccctttCGCGGGCGTGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACAt > 2:4554/6‑150 (MQ=255) gCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATc > 2:1693747/1‑150 (MQ=255) cTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATcc < 2:1110308/150‑1 (MQ=255) tATTCGCGGGCACGCCCGCGAAAGGGCACGACAATCCAGCCACAATCTCCTTGCGTGGCTCGGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCcg > 2:169669/1‑150 (MQ=255) tttCGCGGGCGTGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa > 2:431037/2‑72 (MQ=38) tttCGCGGGCGTGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCaa < 1:431037/71‑1 (MQ=38) tttCGCGGGCGTGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCcgg > 2:369674/2‑150 (MQ=255) ttCGCGGGCGTGCCCGCGAAAGTGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCATCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACACCcggc > 2:348187/1‑150 (MQ=255) ttCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCcggc < 1:1693747/150‑1 (MQ=255) cgcgGGCGTGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCcggcgg < 1:369674/150‑1 (MQ=255) | GAAGAGTGGAAGGTGGAGCTGGTGGTGGCTGACGAGCTGATTGTGCAGGTCGTCGCTGCGCTCAAGCAGAGCCACCCGTACGAGACGCCAGCCTATG‑AAGTCTGGCGGCTCGCCGAGTTCTAGAACGCATCACGGCTATTCGCGGGCACGCCCGCGAAAGGGCCCTACAATCCAGCCACAATCTCCTTGCCTGGCTCCGGCCGCTTCAACAT‑TCCACAAGCCAGCAACCCCATCTCGAACAGCACCCACATCGGCACTGCCAGCATCGTCTGCGAAAACACATCCGGCGG > NC_002947/1188894‑1189183 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |