| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,642,306 | G→A | 12.1% | intergenic (‑92/+60) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,642,306 | 0 | G | A | 12.1% | 259.5 / 21.0 | 100 | intergenic (‑92/+60) | PP_1442/lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Reads supporting (aligned to +/- strand): ref base G (47/40); new base A (6/6); total (53/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.36e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
AAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAG > NC_002947/1642163‑1642453 | aaGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGCTATGAACAGA‑CTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCa > 2:1507818/1‑150 (MQ=255) aGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAg < 2:1775004/150‑1 (MQ=255) aaaGCAGGGCGAAGCTCAGGGGAACGAGCACACCCCGATACGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGATGCCTGTGCCCGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTa > 1:1910527/1‑150 (MQ=255) gCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGGCTGCAGGGGTAGCg > 2:931814/1‑150 (MQ=255) gCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCg > 1:865864/1‑150 (MQ=255) gCAGGGCGAAGCGCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCAATGGCCTGAGGATACCCGATAAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTGTACGAATAAGCTCTCGCCGGCAGGGTTAGCg > 2:593006/1‑150 (MQ=255) ggCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCACCTGCACGGGTacgctacc > 1:896236/1‑143 (MQ=255) gCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TAccc < 1:382318/150‑1 (MQ=255) gAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGt < 1:1842065/150‑1 (MQ=255) cAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAggg > 1:1047560/1‑131 (MQ=255) cAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAggg < 2:1047560/131‑1 (MQ=255) aGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGCATTGGCCCGCGCCTGCAGGGGTAGCG‑TACCGGTGCAGGTg > 1:990388/1‑150 (MQ=255) ggggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGCGGAAAGTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc > 1:722934/1‑150 (MQ=255) ggggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCCTGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc < 1:931814/150‑1 (MQ=255) gggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCTGTGCTGTTGCg > 2:109048/1‑150 (MQ=255) ggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGTCTTCATGGGTAGCG‑TACCCGTGCAGGTGCgg < 1:1507818/150‑1 (MQ=255) gCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCttact < 1:498589/150‑4 (MQ=37) gACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCcgc > 1:1912608/1‑150 (MQ=255) aCGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGACACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCcgcg > 2:166857/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa > 1:1268555/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa > 1:777474/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGATGGCGATGGCCTGAGGATACCCGATGCT‑CGTTGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa < 1:1478320/150‑1 (MQ=255) gagGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAgg‑g < 2:1268555/150‑1 (MQ=255) tCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGACACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt < 1:166857/150‑1 (MQ=255) aTGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGc > 2:1322891/1‑150 (MQ=255) ggtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAg < 2:618969/150‑1 (MQ=255) gggCTCCAAAGGCTGGCGATGCCCTGAGGATACCCGATGTT‑CGAGGAAATTTGTGCGTCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCCCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGc < 2:749466/149‑1 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGGGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa > 1:1249950/1‑131 (MQ=17) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGGGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa < 2:1249950/132‑2 (MQ=17) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1106317/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1722448/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCGGCCTGGTCCGTTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1288555/1‑150 (MQ=255) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGCAAGCCCGCACCTGCACGGGTACGC‑TACCCCTGCAGGCGCGGGCTTACTCGCGaaa > 1:1618443/1‑129 (MQ=18) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa < 2:1618443/130‑2 (MQ=18) gAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa > 2:1481345/1‑150 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:865864/150‑1 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:777474/150‑1 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGAAGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 1:1390790/150‑1 (MQ=255) ggCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCa < 1:1106317/150‑1 (MQ=255) gCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTc < 1:109048/150‑1 (MQ=255) ggCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCAc < 1:1481345/150‑1 (MQ=255) gCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCATGCAGGGTTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACg > 1:1691159/1‑150 (MQ=255) cTGAGGATACCCTATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TAccc < 2:1132706/87‑1 (MQ=255) cTGAGGATACCCTATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TAccc > 1:1132706/1‑87 (MQ=255) cTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCTGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGCAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc > 2:54873/1‑150 (MQ=255) tGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg > 1:391012/1‑150 (MQ=255) ggATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCa < 2:1340851/150‑1 (MQ=255) aCCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCgg > 2:1211707/1‑112 (MQ=255) aCCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCgg < 1:1211707/112‑1 (MQ=255) ccGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGc < 2:751728/95‑1 (MQ=255) ccGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGc > 1:751728/1‑95 (MQ=255) gatgat‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt < 2:1912608/150‑1 (MQ=255) gatgat‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt < 1:1053783/150‑1 (MQ=255) gat‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGc < 2:142139/150‑1 (MQ=255) gat‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCA‑TAc > 2:316670/1‑70 (MQ=255) gat‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCA‑TAc < 1:316670/70‑1 (MQ=255) t‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt < 1:858306/104‑1 (MQ=255) t‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt > 2:858306/1‑104 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGGGATGAAGCCGGCGCCTTCAGTGGTAGCC‑TACCCGTGCAGGTCCGGGGACAGATCTGCCTGCG‑CCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAACGCTTGGCGAAAt > 1:925811/1‑150 (MQ=255) gAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGc > 1:1016260/1‑150 (MQ=255) aaaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCa < 2:391012/150‑1 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGc < 2:1609135/119‑1 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGc > 1:1609135/1‑119 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACCTCGGCAACGCGCTTGGCGAAATGCACt > 2:288007/1‑150 (MQ=255) ttGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGCACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGt < 1:288007/150‑1 (MQ=255) tgctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAg > 2:330978/1‑150 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGGAAAGCGCTTGGCGAAATGCACTGTCAGGc < 1:1322891/150‑1 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGc > 1:816286/1‑150 (MQ=255) tgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGcc < 2:925811/150‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCC‑TCCCCTTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTc < 1:1087410/150‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGACGCTCTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTc < 1:593006/150‑1 (MQ=255) gtgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa > 1:383768/1‑96 (MQ=255) gtgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:383768/96‑1 (MQ=255) tCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTa > 1:1496749/1‑150 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACttt < 2:13433/93‑1 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACttt > 1:13433/1‑93 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTc > 2:558298/1‑150 (MQ=255) cgcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCgg < 1:330978/150‑1 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 1:1032452/1‑150 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 1:234372/1‑150 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 2:122935/1‑150 (MQ=255) aGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttctt > 2:242965/1‑150 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAAt < 1:1405039/110‑1 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAAt > 2:1405039/1‑110 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 2:1491410/1‑150 (MQ=255) cccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 2:11703/1‑150 (MQ=255) cccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg < 2:1032452/150‑1 (MQ=255) cccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCAc < 2:454154/86‑1 (MQ=0) cccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCAc > 1:454154/1‑86 (MQ=0) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACt > 2:474983/1‑113 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACt < 1:474983/113‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa < 2:1496749/150‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCAGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa > 1:1808265/1‑150 (MQ=255) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 2:1761113/1‑148 (MQ=38) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAA‑AGGACCGGCACAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTcgc > 2:1605817/1‑126 (MQ=2) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAA‑AGGACCGGCACAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTcgc < 1:1605817/126‑1 (MQ=2) cgcgCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 2:234372/150‑1 (MQ=255) gcgcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAg > 1:1755000/1‑150 (MQ=255) gcgcCCGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa < 1:850882/139‑1 (MQ=255) gcgcCCGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa > 2:850882/1‑139 (MQ=255) | AAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGAT‑CGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAG > NC_002947/1642163‑1642453 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |