| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,642,334 | T→C | 8.4% | intergenic (‑120/+32) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,642,334 | 0 | T | C | 8.4% | 304.8 / 12.1 | 104 | intergenic (‑120/+32) | PP_1442/lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Reads supporting (aligned to +/- strand): ref base T (53/42); new base C (4/5); total (57/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.67e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
AGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGT > NC_002947/1642186‑1642483 | aGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGCATTGGCCCGCGCCTGCAGGGGTAGCG‑TACCGGTGCAGGTg > 1:990388/1‑150 (MQ=255) ggggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGCGGAAAGTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc > 1:722934/1‑150 (MQ=255) ggggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCCTGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGc < 1:931814/150‑1 (MQ=255) gggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCTGTGCTGTTGCg > 2:109048/1‑150 (MQ=255) gCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCttact < 1:498589/150‑4 (MQ=37) gACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCcgc > 1:1912608/1‑150 (MQ=255) aCGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGACACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCcgcg > 2:166857/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa > 1:1268555/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa > 1:777474/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGATGGCGATGGCCTGAGGATACCCGATGCTCGTTGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa < 1:1478320/150‑1 (MQ=255) gagGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAgg‑g < 2:1268555/150‑1 (MQ=255) tCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGACACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt < 1:166857/150‑1 (MQ=255) aTGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGc > 2:1322891/1‑150 (MQ=255) ggtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAg < 2:618969/150‑1 (MQ=255) gggCTCCAAAGGCTGGCGATGCCCTGAGGATACCCGATGTTCGAGGAAATTTGTGCGTCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCCCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGc < 2:749466/149‑1 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGGGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa < 2:1249950/132‑2 (MQ=17) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGGGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa > 1:1249950/1‑131 (MQ=17) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1722448/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1106317/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCGGCCTGGTCCGTTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGa > 2:1288555/1‑150 (MQ=255) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGCAAGCCCGCACCTGCACGGGTACGC‑TACCCCTGCAGGCGCGGGCTTACTCGCGaaa > 1:1618443/1‑129 (MQ=18) cGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGCAAGCCCGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGaaa < 2:1618443/130‑2 (MQ=18) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa > 2:1481345/1‑150 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:777474/150‑1 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:865864/150‑1 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGAAGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 1:1390790/150‑1 (MQ=255) ggCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCa < 1:1106317/150‑1 (MQ=255) gCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTc < 1:109048/150‑1 (MQ=255) ggCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCAc < 1:1481345/150‑1 (MQ=255) gCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCATGCAGGGTTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACg > 1:1691159/1‑150 (MQ=255) cTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCTGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGCAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc > 2:54873/1‑150 (MQ=255) tGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCg > 1:391012/1‑150 (MQ=255) ggATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCa < 2:1340851/150‑1 (MQ=255) aCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCgg < 1:1211707/112‑1 (MQ=255) aCCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCgg > 2:1211707/1‑112 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGc < 2:751728/95‑1 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGc > 1:751728/1‑95 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt < 1:1053783/150‑1 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt < 2:1912608/150‑1 (MQ=255) gatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑Gc < 2:142139/150‑1 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt < 1:858306/104‑1 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGt > 2:858306/1‑104 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGGGATGAAGCCGGCGCCTTCAGTGGTAGCC‑TACCCGTGCAGGTCCGGGGACAGATCTGCCTGCG‑CCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAACGCTTG‑GCGAAAt > 1:925811/1‑150 (MQ=255) gAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGc > 1:1016260/1‑150 (MQ=255) aaaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCa < 2:391012/150‑1 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGc > 1:1609135/1‑119 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGc < 2:1609135/119‑1 (MQ=255) aTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACCTCGGCAACGCGCTTG‑GCGAAATGCACt > 2:288007/1‑150 (MQ=255) ttGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGCACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGt < 1:288007/150‑1 (MQ=255) tgctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAg > 2:330978/1‑150 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGGAAAGCGCTTG‑GCGAAATGCACTGTCAGGc < 1:1322891/150‑1 (MQ=255) ctgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGc > 1:816286/1‑150 (MQ=255) tgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGcc < 2:925811/150‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCC‑TCCCCTTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTc < 1:1087410/150‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGACGCTCTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTc < 1:593006/150‑1 (MQ=255) gtgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa > 1:383768/1‑96 (MQ=255) gtgCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACa < 2:383768/96‑1 (MQ=255) tCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTa > 1:1496749/1‑150 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACttt > 1:13433/1‑93 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACttt < 2:13433/93‑1 (MQ=255) tttCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTc > 2:558298/1‑150 (MQ=255) cgcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCgg < 1:330978/150‑1 (MQ=255) gcgAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGc > 2:1706115/1‑150 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 1:1032452/1‑150 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 2:122935/1‑150 (MQ=255) gAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAg > 1:234372/1‑150 (MQ=255) aGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttctt > 2:242965/1‑150 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAAt < 1:1405039/110‑1 (MQ=255) gCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAAt > 2:1405039/1‑110 (MQ=255) cccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 2:11703/1‑150 (MQ=255) cccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg < 2:1032452/150‑1 (MQ=255) cccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCAc < 2:454154/86‑1 (MQ=0) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACt < 1:474983/113‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACt > 2:474983/1‑113 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa < 2:1496749/150‑1 (MQ=255) ccGCGCCTGCAGGGGTAGCG‑TACCAGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGa > 1:1808265/1‑150 (MQ=255) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc > 2:1761113/1‑148 (MQ=38) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGttcttc < 1:1761113/148‑1 (MQ=38) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAA‑AGGACCGGCACAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTcgc < 1:1605817/126‑1 (MQ=2) ccGCACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAA‑AGGACCGGCACAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTcgc > 2:1605817/1‑126 (MQ=2) cgcgCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 2:234372/150‑1 (MQ=255) gcgcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAg > 1:1755000/1‑150 (MQ=255) gcgcCCGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa > 2:850882/1‑139 (MQ=255) gcgcCCGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa < 1:850882/139‑1 (MQ=255) cTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTcgc > 2:1695014/1‑150 (MQ=255) tGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTcgcc > 2:955119/1‑150 (MQ=255) aGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGGACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCcgcg > 1:1720990/1‑150 (MQ=255) gggTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGGTACGGGCAAGTGGTCACTGGCATGGTA‑TTCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGt > 1:228450/1‑150 (MQ=255) ggTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGtt > 1:1871303/1‑150 (MQ=255) ggTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGtt < 1:558298/150‑1 (MQ=255) atcG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTggg < 2:228078/148‑1 (MQ=255) ccGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTc < 2:484827/93‑1 (MQ=255) ccGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTc > 1:484827/1‑93 (MQ=255) cGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGAACTTTCGCCACGTCGGGAAAGCGCTTG‑GCGAAATGAACTGTCAGCCCTTCGCGCAGTAAGTCGGGCAGTCCTTCCAAGTCGCCGCGCTCGGGCGCCGGCa > 2:85456/1‑150 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTggg > 2:1163489/1‑141 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTggg < 1:1163489/141‑1 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAg > 1:971477/1‑150 (MQ=255) gTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAg > 1:650310/1‑150 (MQ=255) tGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGGTCAGt < 2:971477/150‑1 (MQ=255) tGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGt < 1:955119/150‑1 (MQ=255) | AGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCGCGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGG‑GCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTG‑GCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCAGT > NC_002947/1642186‑1642483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |