| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,007,281 | G→A | 12.5% | L42L (CTG→TTG) | PP_1790 ← | acylneuraminate cytidylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,007,281 | 0 | G | A | 12.5% | 140.0 / 9.1 | 56 | L42L (CTG→TTG) | PP_1790 | acylneuraminate cytidylyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (26/23); new base A (3/4); total (29/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACG > NC_002947/2007136‑2007422 | tGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGc > 1:1512101/1‑150 (MQ=255) gTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaag < 2:718325/150‑2 (MQ=255) aGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaag < 1:1162449/133‑2 (MQ=255) aGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaag > 2:1162449/1‑132 (MQ=255) ggTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAAtt > 2:1140307/1‑150 (MQ=255) tcttctCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCg > 1:943786/1‑150 (MQ=255) ttctCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTg < 1:1140307/150‑1 (MQ=255) ttctCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTg < 2:1512101/150‑1 (MQ=255) gtcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGtt > 2:1203098/1‑111 (MQ=255) gtcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGtt < 1:1203098/111‑1 (MQ=255) gtcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGgccgc > 2:1063940/1‑150 (MQ=255) tcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCtt < 1:1325098/114‑1 (MQ=255) tcgCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCtt > 2:1325098/1‑114 (MQ=255) gCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCaa > 2:1333546/1‑150 (MQ=255) tATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAAc < 2:747956/113‑1 (MQ=255) tATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAAc > 1:747956/1‑113 (MQ=255) gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaagca > 1:769006/1‑109 (MQ=255) gAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAACTGCTTCaagca < 2:769006/112‑4 (MQ=255) ttGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTtata < 1:250087/150‑1 (MQ=255) ttttATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGttt < 2:1839300/142‑1 (MQ=255) ttttATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGttt > 1:1839300/1‑142 (MQ=255) tattatTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGc < 1:630569/92‑1 (MQ=255) tattatTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGc > 2:630569/1‑92 (MQ=255) ttattTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTc > 1:552502/1‑150 (MQ=255) ttttGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGa < 1:1063940/150‑1 (MQ=255) ttttGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGa > 1:474227/1‑150 (MQ=255) aGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGt < 2:943786/150‑1 (MQ=255) gCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGtt > 2:927816/1‑150 (MQ=255) cGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAg > 1:550886/1‑100 (MQ=255) cGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAg < 2:550886/100‑1 (MQ=255) tGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCt < 1:648134/150‑1 (MQ=255) cGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCtt < 1:1255695/150‑1 (MQ=255) gTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCATCTGCTTGAAGCAGTTGCTTAAACGTGATGTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCg < 2:942687/150‑1 (MQ=255) aGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCggcag < 2:589205/150‑1 (MQ=255) tttCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCTGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGaa > 2:1632531/1‑150 (MQ=255) tcgtTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGc > 1:1844019/1‑73 (MQ=255) tcgtTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGc < 2:1844019/73‑1 (MQ=255) aGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCa > 1:1183384/1‑150 (MQ=255) tACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCata < 2:1183384/150‑1 (MQ=255) gATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATattt > 1:1638995/1‑150 (MQ=255) tGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttca < 2:474227/150‑1 (MQ=255) ggAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttcat > 2:851844/1‑150 (MQ=255) aTCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAac > 1:973547/1‑125 (MQ=255) aTCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAac < 2:973547/125‑1 (MQ=255) aaCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCg > 2:1922111/1‑86 (MQ=255) aaCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCg < 1:1922111/86‑1 (MQ=255) aaCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTTGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATatttca < 2:792169/143‑1 (MQ=255) aaCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAAGGCAGAAAACACGTCGTTTTTTCATatttca > 1:792169/1‑143 (MQ=255) aCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGttt > 1:900423/1‑130 (MQ=255) aCAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGttt < 2:900423/130‑1 (MQ=255) ttGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACg > 2:977355/1‑150 (MQ=255) ttGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTAGTCGGAATGGGTTCGCTGCCTTTTTGGCAGGGCAGAAAAGACGTCGTTTTTTCGTATTTCTTTTCAGTGGCCCATAAACg > 2:276133/1‑150 (MQ=255) ttGAAGCAACTGCTTCAACTTGATTTCAATCAAGcc < 2:1264284/36‑1 (MQ=21) ttGAAGCAACTGCTTCAACTTGATTTCAATCAAGcc > 1:1264284/1‑36 (MQ=21) aaGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACAcgt > 2:53158/1‑111 (MQ=255) aaGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACAcgt < 1:53158/111‑1 (MQ=255) | TGGTCAGTGCTGGTCTGGCTGGAAGATAGGTCTTCTCGTCGCTTATGAAGTTTGATTTTATTATTTTGAAGCGATGAGGCGTAGTCAAGGATGCTTTCGTCGTTGGTGCTCAGTACGATGGAATCAACAGCGTCTGCTTGAAGCAGTTGCTTCAACTTGATTTCAATCAAGCCGAATTCGTGGCCGCCAAATGGTTTTATATTTTTATTCGGAATGCGTTCGCTGCCTTTTCGGCAGGGCAGAAAACACGTCGTTTTTTCATATTTCATTTCAGTGGCCCATAAACG > NC_002947/2007136‑2007422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |