| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,100,110 | A→G | 6.1% | intergenic (‑178/‑27) | PP_1875 ← / → PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,100,110 | 0 | A | G | 6.1% | 344.2 / 8.5 | 116 | intergenic (‑178/‑27) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (50/57); new base G (3/4); total (54/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
TCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGCCGCGCGCTGGCA > NC_002947/2099964‑2100258 | tctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑aaaa > 1:1138443/1‑150 (MQ=255) tgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCACC‑aaaaaa < 2:1195647/150‑1 (MQ=255) cATTCCAGTCGGTCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTga < 2:1109095/150‑1 (MQ=255) aTTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCAGCAGGCGGAACGCAAGCCCTGTGAGAGCGGGCAAACCCGC‑GGTGGGGCGCGCGGCGGCCCCC‑AAAAAACTgag > 1:619376/1‑150 (MQ=255) ttCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGAt > 1:1824062/1‑150 (MQ=255) cgTTGCTCGCCAAGCGGGGGCCGCTTGGCCCCCCTCCGGGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGt < 1:1372358/149‑1 (MQ=255) aGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGt > 2:906751/1‑150 (MQ=255) aGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGt < 2:1784284/150‑1 (MQ=255) tCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑CAAAAACTGAGATTGTTAGGAg > 2:1138730/1‑150 (MQ=255) tCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAg > 2:105299/1‑150 (MQ=255) cAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAgtcgt > 1:1546172/1‑150 (MQ=255) aGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCa < 2:868134/150‑1 (MQ=255) aGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGCACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCa < 1:1050621/150‑1 (MQ=255) gCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGGGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCAt > 1:1390510/1‑150 (MQ=255) ggggCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGa < 1:105299/150‑1 (MQ=255) ggggCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGa > 2:618365/1‑150 (MQ=255) gggCCCCTGGGCGCCCCTCCGCGGGTTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGGGCGGGAAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAc < 2:1417210/150‑1 (MQ=255) ggCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGCTACAGCTTAGCCCCAGGCTGAACGCAAGCACTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcg > 1:1660965/1‑150 (MQ=255) gCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑aaaa < 1:810441/119‑1 (MQ=255) gCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑aaaa > 2:810441/1‑119 (MQ=255) ccGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTa < 1:788667/132‑1 (MQ=255) ccGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTa > 2:788667/1‑132 (MQ=255) ccGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgct > 2:1344678/1‑150 (MQ=255) cGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCCAAAAAAACTGGGATTGTTAGGAGTCGTCATGGAcgct > 1:1427611/1‑150 (MQ=255) gCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcg > 2:1082931/1‑150 (MQ=255) cTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑Acttggcgatcaactgaaatgaacagacagacccaccag < 2:1578895‑M2/150‑39 (MQ=255) gcCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATc > 1:615319/1‑150 (MQ=255) gcCCCTCCGCGGGCGTGTCTGTTCCCGCAGGTACATGTTCACCATAGCGTGAACGCAAACCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATc < 2:610517/150‑1 (MQ=255) cTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacagacccaccagcagccggggc < 2:541393‑M2/150‑49 (MQ=255) tCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCCGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑Acttggcgatcaactgaaatgaacagacagacccaccagcagccggggct < 1:1849543‑M2/150‑50 (MQ=255) tCCGCGGGCTTGCCCGTTCCCACAGCTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCttt > 2:1487843/1‑150 (MQ=255) gcgTGCTTGCCCGTTCCCACAGGTACAGCTTACCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCt < 1:301058/150‑1 (MQ=255) gcgGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑Acttggcgatcaactgaaatgaacagacagacccaccagcagccggggctatt > 1:1578895‑M2/1‑98 (MQ=255) cgGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg < 2:864300/150‑1 (MQ=255) cgGGCTTGCCCGTTCCCACAGGTACAGCGTAGCCCCAGGCTGAACGCAAGCACTGTGGGA‑CAGACGTGTGCTCTTGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTg < 1:1790667/150‑1 (MQ=255) gCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCtt > 2:669737/1‑134 (MQ=255) tGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctat > 1:541393‑M2/1‑91 (MQ=255) gCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACcgcg > 1:1764909/1‑150 (MQ=255) cgggtcccaCAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑Acttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcg > 1:1051064‑M2/5‑88 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc > 1:1758768/1‑126 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc > 1:1786068/1‑126 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc < 2:1786068/126‑1 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGc > 1:959143/1‑134 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGcc > 1:1540669/1‑150 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgct < 2:1723994‑M2/150‑63 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacagacccacca < 1:131323‑M2/125‑38 (MQ=255) ccGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacagacccacca > 2:131323‑M2/1‑88 (MQ=255) gTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCCAAGCGGCCCCC‑Gcttggcgatcaactgaaatgaacagacaga > 2:1632925‑M2/1‑86 (MQ=255) tCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAAt < 2:1764909/150‑1 (MQ=255) ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGAc > 2:595750/1‑114 (MQ=255) ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg > 2:308349/1‑150 (MQ=255) ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg > 2:1126390/1‑150 (MQ=255) ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg < 1:1145031/150‑1 (MQ=255) ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg < 1:971313/150‑1 (MQ=255) gTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTga > 2:45146/1‑85 (MQ=255) gTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTga < 1:45146/85‑1 (MQ=255) gTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAg > 2:44268/1‑94 (MQ=255) gTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAg < 1:44268/94‑1 (MQ=255) aGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc < 1:618365/150‑1 (MQ=255) cTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc < 2:1540669/150‑1 (MQ=255) cTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc > 1:1542901/1‑150 (MQ=255) tAGCCCCAGGCTGAACCCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCt < 1:1635473/150‑1 (MQ=255) ccAGGCGGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGGGCCGAATCGGTACTGGCGCGCCTTGAAc < 1:1809378/150‑1 (MQ=255) aGGCTGACCGCAAGCCGTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAccc < 2:845424/150‑1 (MQ=255) aGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAccc < 1:1244385/150‑1 (MQ=255) gCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATgg > 1:1162887/1‑89 (MQ=255) gCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATgg < 2:1162887/89‑1 (MQ=255) tGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGTGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGt > 1:941770/1‑150 (MQ=255) gAACGCACGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCCCGCAGCGGCCCAA‑CACTACCTATGTCGGCGAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt < 1:442144/150‑1 (MQ=255) aaCGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTg > 1:716513/1‑150 (MQ=255) cGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑Aaaaaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgggaaaccggctcgggactcatgga > 2:348960‑M2/1‑53 (MQ=255) cGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGcc < 2:1542901/150‑1 (MQ=255) gCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATc > 2:1105348/1‑96 (MQ=255) gCAAGCCCTGTGGGAGCGGGCAAGCACGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATc < 1:1105348/96‑1 (MQ=255) cccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCttt < 2:1780024/96‑1 (MQ=255) cccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTGCTGGCGCGCCTTGAACCCCTGTTGCCGGcaca > 2:515925/1‑150 (MQ=255) cccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGcaca > 1:845004/1‑150 (MQ=255) cccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGcaca > 2:760302/1‑150 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGa > 1:1407372/1‑66 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGa < 2:1407372/66‑1 (MQ=255) cTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAAc > 2:1521376/1‑150 (MQ=255) gAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGc < 1:1082931/150‑1 (MQ=255) gCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGcac > 2:684439/1‑150 (MQ=255) gCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTAGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCTCCTTGAACCACTGTTGCCGGCATCACACCCGcac > 1:401094/1‑150 (MQ=255) ggCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGcc > 2:299555/1‑131 (MQ=255) ggCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGcc < 1:299555/131‑1 (MQ=255) aGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACt < 1:1487843/150‑1 (MQ=255) cccGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg < 1:760302/150‑1 (MQ=255) cccGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg < 1:308349/150‑1 (MQ=255) ccGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTggg < 2:1660965/150‑1 (MQ=255) cgc‑gGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgggg > 1:1941210/1‑150 (MQ=255) ggAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGcac < 2:1496705/150‑1 (MQ=255) aGGGGCGCCAAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATAGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGcacca < 2:126023/150‑1 (MQ=255) gcgcAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTgg < 2:615319/150‑1 (MQ=255) cgcAGCGGCCCCC‑Acttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgggaaaccggctcgggactcatggatatcaagttcaccaatcgcctgtcatacaagc > 2:1849543‑M2/1‑14 (MQ=255) cgcAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGc > 2:1796101/1‑150 (MQ=255) gcAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTATGGACCGCGCCGAATCGGTACTAGCGCGCCTTGAAACCGTGTTGCCGCCACACCGCCCGCACATCAACTGGGACCCCCCACTGGcc > 2:545349/1‑150 (MQ=255) ccgcc‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGCCGCGCGCt < 2:1040488/147‑1 (MQ=255) ccc‑Acttggcgatcaactgaaatgaacagacagacccaccagtagccggggctattcggctatgcttgcgcagcgcaaggaacgggaaaccggctcgggactcatggatatcaagttcaccaatcgcctgtcatacaagcaagcccggtt < 1:640588‑M2/150‑147 (MQ=255) c‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGACCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGCCGCGCGCTGGCa < 2:1399272/150‑1 (MQ=255) | TCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGC‑GGAGGGGCGCGCAGCGGCCCCC‑AAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGCCGCGCGCTGGCA > NC_002947/2099964‑2100258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |