| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,340,746 | A→C | 12.2% | intergenic (+37/‑78) | dctA‑II → / → yraO | C4‑dicarboxylate transport protein/transporter YraO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,340,746 | 0 | A | C | 12.2% | 192.7 / 19.9 | 82 | intergenic (+37/‑78) | dctA‑II/yraO | C4‑dicarboxylate transport protein/transporter YraO |
| Reads supporting (aligned to +/- strand): ref base A (26/46); new base C (3/7); total (29/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.05e-01 | |||||||||||
GGAAAACGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC > NC_002947/2340598‑2340893 | ggAAAACGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAg > 1:364195/1‑150 (MQ=255)ggAAAACGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAg > 1:187972/1‑150 (MQ=255) gAAAACGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAgg > 2:1307043/1‑150 (MQ=255) aCGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGtt < 1:240915/150‑1 (MQ=255) cGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTg > 1:1710025/1‑150 (MQ=255) gttaCCCCCAGAAGCTGCAGAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCCCCAGGCGTTGCCggg > 2:572926/4‑150 (MQ=255) gACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCAACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTg < 2:1769877/150‑1 (MQ=255) aCCGCCAGACGCTGCACAGCCGGCTGAGCGGCGAGCCCGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTgg < 2:331296/150‑1 (MQ=255) aCCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTgg < 1:1307043/150‑1 (MQ=255) cccgaaGACTCTGCACAGCCGGATGAACGGCGAGCCCGCGGTCACCCCCGTCGCTGAAACAACCGACTGTGTCGCCGAACCCCA‑CCGCCCCGGCTCAGCCCCGACGCCCTCCAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTggg < 2:781581/145‑1 (MQ=255) ccGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTggg < 2:349266/150‑1 (MQ=255) ccGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCAACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTggg < 1:1509374/150‑1 (MQ=255) caggcgtttactcatgatcaggtaggtgaaggtcaccaccatgatcaggcccagaagtgcgagcatggtttgttctcttgtttttattgtctatgtggccacctgcagcgcagacggccccctgaCCCCCACCAGGCGTTGCCGGgtgtg > 1:1327760‑M1/126‑148 (MQ=255) cGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTgggg > 2:1500384/1‑150 (MQ=255) cGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTgggg < 1:1895063/150‑1 (MQ=255) aGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCa < 1:1500384/150‑1 (MQ=255) aGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGACCCCCACCCGGCAATGCCTGGTgggggcct < 1:250363/150‑4 (MQ=255) gACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAg < 2:680809/150‑1 (MQ=255) gCTGCACAGCCGGCTGAAAGGCGAGCCGGTGGTCACCCTCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAgggg < 1:820655/150‑1 (MQ=255) gCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGGCTACTGAGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCACGCTTTCTGCAGGCCCCAAACAGGCGTTCCCGGGTTTGTGTCAGGCGGcc < 2:1574072/150‑1 (MQ=255) gCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCCGCGATGCGGCCCGCGACGCGGAAGCTTGTGGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGcc > 1:228578/1‑150 (MQ=255) gCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGca < 1:286310/150‑2 (MQ=255) ggCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTgcgc > 1:314811/1‑150 (MQ=255) aaCGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAg < 1:756119/150‑1 (MQ=255) aaCGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAg < 2:1710025/150‑1 (MQ=255) ggCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTg < 1:151645/150‑1 (MQ=255) gCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTgg < 1:1116121/150‑1 (MQ=255) gtggtCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCACACCAGGCGTTGCCGGGTGGGGGTCAgggg < 2:514134/122‑1 (MQ=255) gtggtCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCACACCAGGCGTTGCCGGGTGGGGGTCAgggg > 1:514134/1‑122 (MQ=255) tggtCACCCCCGTCGCTGAAACAGGAGACTGGGTTGCAAGACCAAG‑CCGGCACGGGTGAGCACCGACCCCATAAACCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGa < 1:1398597/150‑1 (MQ=255) cACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAAt < 2:1615168/150‑1 (MQ=255) aCCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAggg < 2:1597901/115‑1 (MQ=255) aCCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAggg > 1:1597901/1‑115 (MQ=255) ccccGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGt > 1:1039801/1‑102 (MQ=255) ccccGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGt < 2:1039801/102‑1 (MQ=255) ccGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGc > 2:332449/1‑90 (MQ=255) ccGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGc < 1:332449/90‑1 (MQ=255) tCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACaa < 2:497880/150‑1 (MQ=255) tCGCTGAAACAGCCGACTCGGTCGCC‑AAACACACCCGCCACGGCTGAGCTCCGACACCCTCAAGCTTTTCGCACGCCCCCACCAGGGGTTGGCGGGTGCGGGGCAGGGGGCCGCATCCGCCGGCGGTGCCCACATAGACACTAGAAACaa < 2:518069/150‑1 (MQ=255) gCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAaga < 2:1799240/150‑1 (MQ=255) gCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACtt > 1:774639/1‑150 (MQ=255) aaCCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTgg < 1:1116109/150‑1 (MQ=255) aaCCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTgg < 2:364195/150‑1 (MQ=255) aca‑cCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTAGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCt < 2:187972/150‑1 (MQ=255) ccACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAgg < 2:649457/70‑1 (MQ=255) ccACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAgg > 1:649457/1‑70 (MQ=255) ccACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAt > 1:759377/1‑150 (MQ=255) aCGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACAt < 1:377451/96‑1 (MQ=255) aCGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACAt > 2:377451/1‑96 (MQ=255) ggCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAtggtg > 2:241384/1‑150 (MQ=255) cTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATggtggt < 1:1282042/150‑1 (MQ=255) ccccGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCt > 1:1159464/1‑150 (MQ=255) cccGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCtt > 2:1096845/1‑150 (MQ=255) cccGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCtt > 2:1097302/1‑150 (MQ=255) acacCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCacc < 2:228578/150‑1 (MQ=255) ccTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCa < 2:11422/67‑1 (MQ=255) ccTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCa > 1:11422/1‑67 (MQ=255) agacggccccctgaCCCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAt > 2:1537781‑M1/15‑126 (MQ=255) agacggccccctgaCCCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAt < 1:1537781‑M1/112‑1 (MQ=255) aaGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGa > 2:395549/1‑122 (MQ=255) aaGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGa < 1:395549/122‑1 (MQ=255) tttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAtggtgg < 1:556113/127‑1 (MQ=255) tttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCAtggtgg > 2:556113/1‑127 (MQ=255) ttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGa < 1:1096845/150‑1 (MQ=255) ttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGa < 2:314811/150‑1 (MQ=255) ttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGa < 2:1387607/150‑1 (MQ=255) ttttGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGa < 1:1097302/150‑1 (MQ=255) cccctgaCCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGt < 1:693493‑M1/143‑1 (MQ=255) ccctgaCCCCCACCCGGCAACGCCTGGTGGGGGCCTGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCCTCACCTACCTGATCATGAGTa < 2:817564‑M1/144‑1 (MQ=255) ccctgaCCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTa > 2:693493‑M1/7‑150 (MQ=255) cctgaCCCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACaaa < 2:1932361‑M1/84‑1 (MQ=255) cctgaCCCCCACCCGGCAACGCCTGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACaaa > 1:1932361‑M1/6‑89 (MQ=255) cctgaCCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTaa < 2:1177252‑M1/145‑1 (MQ=255) cctgaCCCCCACCCGGCAACGCCTGGTGGGGGCCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTaa < 2:1177339‑M1/145‑1 (MQ=255) gCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGc < 1:572926/150‑1 (MQ=255) CCCCAGCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTGACCTCCCTCATCGTGAGTAAACGCCt < 2:410771‑M1/150‑1 (MQ=255) CCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACaa > 1:476340‑M1/1‑65 (MQ=255) CCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACaa < 2:476340‑M1/65‑1 (MQ=255) CCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAg > 1:1409823‑M1/1‑140 (MQ=255) CCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAg < 2:1409823‑M1/140‑1 (MQ=255) CCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTg < 1:1801137‑M1/150‑1 (MQ=255) CCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAc < 2:807785‑M1/150‑1 (MQ=255) | GGAAAACGCCTGTGACCGCCAGACGCTGCACAGCCGGCTGAACGGCGAGCCGGTGGTCACCCCCGTCGCTGAAACAGCCGACTGGGTCGCCGAACCACA‑CCGCCACGGCTGAGCCCCGACACCCTCAAGCTTTTTGCAGGCCCCCACCAGGCGTTGCCGGGTGGGGGTCAGGGGGCCGTCTGCGCTGCAGGTGGCCACATAGACAATAAAAACAAGAGAACAAACCATGCTCGCACTTCTGGGCCTGATCATGGTGGTGACCTTCACCTACCTGATCATGAGTAAACGCCTGTCAC > NC_002947/2340598‑2340893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |