Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,344,736 T→G 7.0% intergenic (‑44/+31) PP_2061 ← / ← PP_2062 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,344,7360TG 7.0% 265.0 / 8.4 91intergenic (‑44/+31)PP_2061/PP_2062hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (42/41);  new base G (3/3);  total (46/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 101 total aligned reads displayed.

GTCGACAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAGGTGTTTGGCTTGGT  >  NC_002947/2344588‑2344885
                                                                                                                                                      |                                                                                                                                                     
gtcgACAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGCCGACCAGGGAAGTttcttc                                                                                                                                                      >  2:109228/1‑150 (MQ=255)
 tcgACAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTGAGGAGAGTCGCCGAAGACGACCAGGGTCGTTtcgtcg                                                                                                                                                     >  1:1097911/1‑150 (MQ=255)
 tcgACAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTtcgtcg                                                                                                                                                     >  1:90905/1‑150 (MQ=255)
    aCAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCt                                                                                                                                                  <  1:1359115/150‑1 (MQ=255)
     cAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGACGCCtt                                                                                                                                                 >  1:806969/1‑150 (MQ=255)
             aCCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATg                                                                                                                                         >  1:111044/1‑150 (MQ=255)
              ccccGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGa                                                                                                                                        <  2:1165179/150‑1 (MQ=255)
               cccGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAg                                                                                                                                       >  2:1001571/1‑150 (MQ=255)
                  gTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAgtgt                                                                                                                                    >  2:700013/1‑150 (MQ=255)
                        aTAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTAttt                                                                                                                              >  1:176652/1‑150 (MQ=255)
                        aTAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGACGCCTTCATTTATGAGTGTGTAttt                                                                                                                              <  2:806969/150‑1 (MQ=255)
                                tataACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCa                                                                                                                      <  1:1883100/150‑1 (MQ=255)
                                 ataACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAg                                                                                                                     <  2:1340917/150‑1 (MQ=255)
                                   aaCCCGCAGCGCTAGCGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCGGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGGAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTCCATCAgag                                                                                                                   <  2:328014/150‑3 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCGGCGAACGGTTCAGGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTg                                                                                                                   >  2:1928063/1‑150 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCCAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTg                                                                                                                   >  1:15757/1‑150 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAg                                                                                                                     <  2:1583593/148‑1 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAg                                                                                                                     >  1:1583593/1‑148 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTg                                                                                                                   <  2:1584725/150‑1 (MQ=255)
                                   aaCCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTg                                                                                                                   >  2:40481/1‑150 (MQ=255)
                                     cccGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGAt                                                                                                                 <  1:700013/150‑1 (MQ=255)
                                      ccGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATg                                                                                                                <  1:595366/150‑1 (MQ=255)
                                       cGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATgg                                                                                                               >  1:1216181/1‑150 (MQ=255)
                                        gCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGa                                                                                                                                        <  2:1118845/124‑1 (MQ=255)
                                        gCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGa                                                                                                                                        >  1:1118845/1‑124 (MQ=255)
                                               tAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGAttt                                                                                                       >  2:1025914/1‑150 (MQ=255)
                                                  cGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGGGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGAtttttt                                                                                                    <  1:109228/150‑1 (MQ=255)
                                                   gTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGAttttttt                                                                                                   >  1:1078263/1‑150 (MQ=255)
                                                   gTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGAttttttt                                                                                                   >  2:32916/1‑150 (MQ=255)
                                                    ttATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGc                                                                                                                                                    >  2:1544733/1‑100 (MQ=255)
                                                    ttATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGc                                                                                                                                                    <  1:1544733/100‑1 (MQ=255)
                                                     tATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTgc                                                                                                 >  1:89919/1‑150 (MQ=255)
                                                      aTTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTgcg                                                                                                <  2:89919/150‑1 (MQ=255)
                                                      aTTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTgcg                                                                                                <  1:1515885/150‑1 (MQ=255)
                                                         gCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTa                                                                                             >  2:489543/1‑150 (MQ=255)
                                                                ttGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATtgttgt                                                                                      >  1:1526814/1‑150 (MQ=255)
                                                                ttGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATtgttgt                                                                                      >  1:678068/1‑150 (MQ=255)
                                                                ttGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATtgttgt                                                                                      >  1:841151/1‑150 (MQ=255)
                                                                 tGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTc                                                                                     <  2:841151/150‑1 (MQ=255)
                                                                   aaaTTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGt                                                                                   <  2:615063/150‑1 (MQ=255)
                                                                      ttCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGa                                                                                >  1:1918981/1‑150 (MQ=255)
                                                                      ttCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGa                                                                                <  2:1526814/150‑1 (MQ=255)
                                                                      ttCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGa                                                                                >  1:1626243/1‑150 (MQ=255)
                                                                         cacaTTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGataa                                                                             <  2:90905/150‑1 (MQ=255)
                                                                         cacaTTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGataa                                                                             <  1:1025914/150‑1 (MQ=255)
                                                                         cacaTTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGataa                                                                             >  1:1651392/1‑150 (MQ=255)
                                                                            aTTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAatat                                                                          >  2:271637/1‑150 (MQ=255)
                                                                              ttCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGACGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGGTAGGATTg                                                                        >  2:1920757/1‑150 (MQ=255)
                                                                                   cgccgcTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTAttt                                                                                                                              <  2:1326146/91‑1 (MQ=255)
                                                                                   cgccgcTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTAttt                                                                                                                              >  1:1326146/1‑91 (MQ=255)
                                                                                   cgccgcTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTc                                                                   >  2:577847/1‑150 (MQ=255)
                                                                                                gAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCtt                                                       <  1:40481/150‑1 (MQ=255)
                                                                                                  gTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGc                                                     <  2:866961/150‑1 (MQ=255)
                                                                                                  gTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGc                                                     >  1:963687/1‑150 (MQ=255)
                                                                                                    aTTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCtt                                                   <  2:1078263/150‑1 (MQ=255)
                                                                                                       cAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTtata                                                <  1:1928063/150‑1 (MQ=255)
                                                                                                        aaGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCa                                                                                                                      <  2:886793/79‑1 (MQ=255)
                                                                                                        aaGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCa                                                                                                                      >  1:886793/1‑79 (MQ=255)
                                                                                                        aaGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATaa                                               >  2:792915/1‑150 (MQ=255)
                                                                                                        aaGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATaa                                               >  1:1170817/1‑150 (MQ=255)
                                                                                                        aaGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATaa                                               >  2:1325122/1‑150 (MQ=255)
                                                                                                         agagGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATaaa                                              <  2:963687/150‑1 (MQ=255)
                                                                                                          gagGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTGATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAg                                             >  1:1593258/1‑150 (MQ=255)
                                                                                                             ggCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCtt                                          >  2:1769866/1‑150 (MQ=255)
                                                                                                              gCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCttt                                         <  2:1593258/150‑1 (MQ=255)
                                                                                                                 tCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGcc                                                          <  1:1278230/130‑1 (MQ=255)
                                                                                                                 tCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGcc                                                          >  2:1278230/1‑130 (MQ=255)
                                                                                                                    gTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCAt                                   >  1:1294358/1‑150 (MQ=255)
                                                                                                                     tgaagGCGACGAAACGACCCTGGTCGTCTTCGGCGCGTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCAt                                   <  2:1123798/146‑1 (MQ=38)
                                                                                                                     tgaagGCGACGAAACGACCCTGGTCGTCTTCGGCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCAt                                   >  1:1123798/4‑149 (MQ=38)
                                                                                                                     tAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATc                                  <  1:577847/150‑1 (MQ=255)
                                                                                                                      agagGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATcc                                 <  2:1651392/150‑1 (MQ=255)
                                                                                                                        agGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCtt                               <  2:1626243/150‑1 (MQ=255)
                                                                                                                        agGCGACGAAACGACCCTGGTCGTCTTCGGCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTAtt                                                                                           <  2:1083450/90‑1 (MQ=21)
                                                                                                                        agGCGACGAAACGACCCTGGTCGTCTTCGGCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTAtt                                                                                           >  1:1083450/1‑90 (MQ=21)
                                                                                                                          gcgcCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGa                             <  2:1216181/150‑1 (MQ=255)
                                                                                                                              cGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAACCTTTTGGCATCCTTGAGTTc                         >  2:1690756/1‑150 (MQ=255)
                                                                                                                               gAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCg                        <  1:32916/150‑1 (MQ=255)
                                                                                                                                aaGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGGTCgg                       >  1:1299539/1‑150 (MQ=255)
                                                                                                                                 aGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGt                      <  2:111044/150‑1 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGTGCTATTGTTGTCGTTGATATTTTTCGGTTCGTCGATGCCCTTGCTTATAAAGCTTTTTGCATCCTTGAGTTCGGtt                     >  2:51999/1‑150 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGAt                                                                      <  2:1467329/101‑1 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGAt                                                                      >  1:1467329/1‑101 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGtt                     <  2:1294358/150‑1 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGtt                     <  2:15757/150‑1 (MQ=255)
                                                                                                                                  gacgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGtt                     >  1:1526967/1‑150 (MQ=255)
                                                                                                                                   acgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATc                                  <  1:1024518/136‑1 (MQ=255)
                                                                                                                                   acgacCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATc                                  >  2:1024518/1‑136 (MQ=255)
                                                                                                                                      acCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTaa                 <  2:505739/150‑1 (MQ=255)
                                                                                                                                      acCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTaa                 <  2:1526967/150‑1 (MQ=255)
                                                                                                                                       ccAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAg                <  2:176652/150‑1 (MQ=255)
                                                                                                                                         ctggTCGTCTTCGGCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGc                                                     >  1:1415660/3‑112 (MQ=255)
                                                                                                                                         ctggTCGTCTTCGGCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGc                                                     <  2:1415660/110‑1 (MQ=255)
                                                                                                                                                    cgtcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAGGTGTTTGGCTTg    <  2:1918981/150‑1 (MQ=255)
                                                                                                                                                    cgtcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAGGTGTTTCGCTTg    <  1:1920757/150‑1 (MQ=255)
                                                                                                                                                     gtcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTAt                                                                                            >  1:672253/1‑61 (MQ=255)
                                                                                                                                                     gtcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTCTTTGCGCTAt                                                                                            <  2:672253/61‑1 (MQ=255)
                                                                                                                                                      tcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTg                                       <  1:146288/113‑1 (MQ=255)
                                                                                                                                                      tcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTg                                       >  2:146288/1‑113 (MQ=255)
                                                                                                                                                      tcgCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAGGTGTTTGGCTTGgt  <  1:1001571/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
GTCGACAATAAATACCCCGTTCTCATAGGCGATATAACCCGCAGCGCTAACGTTATTGCTGGCATTGAAATTCCACATTTCAGCGCCGCTGGCGTGAGTATTCAAGAGGGCGTCAGTAGAGGCGCCGAAGACGACCAGGGTCGTTTCGTCGCCTTCATTTATGAGTGTGTATTTGTAAATCAGTGATGGGCTGATTTTTTTGCGCTATTGTTGTCGTTGATAATATTGATGTCTACGATGCCCTTGCTTATAAAGCTTTTGGCATCCTTGAGTTCGGTTTTAAGGTGTTTGGCTTGGT  >  NC_002947/2344588‑2344885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: