| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,032 | C→T | 7.9% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,032 | 0 | C | T | 7.9% | 746.9 / 39.7 | 279 | T846T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (131/124); new base T (10/12); total (142/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.11e-01 | |||||||||||
Only 100 of 284 total aligned reads displayed.
GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 | ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg > 1:229639/1‑150 (MQ=32) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 2:258567/150‑1 (MQ=32) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg > 1:518025/1‑150 (MQ=32) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCCGCGTCACCATCGAGAACGCCACAGGc > 2:723613/1‑150 (MQ=17) cAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGc > 2:1742923/1‑150 (MQ=32) aGACGCCGGTAACAGTGACCCTGTGCAATGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCg < 1:819081/150‑1 (MQ=12) gACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 1:475344/1‑150 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTaa < 2:1470028/150‑1 (MQ=35) ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGACGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 1:449783/1‑150 (MQ=38) gTGACAGTGACCCTGTCCCACGGCCTAGCTGTCACCTCTGAACCCCACAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 2:1667331/150‑1 (MQ=11) gTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTACAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 2:167892/1‑150 (MQ=37) aCAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 1:1238017/150‑1 (MQ=35) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCa > 1:327059/1‑150 (MQ=33) aGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGACTTCCAGCCCCCG‑GCGAATGACATCTACAACAACCGCTCGACCCCCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGaccc > 2:347005/1‑147 (MQ=11) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTGTTAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 2:751379/150‑1 (MQ=12) tCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGCCAGCGTCACCATCAAGAACGCCACAGGCGGTAATTTCGAGCAACAGACCACg > 1:969877/1‑150 (MQ=255) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 1:175404/150‑1 (MQ=32) aaCTGCCAAACCATTACCGTTGAAGCCGGCAAGCACAAAGTGNTCGTCCCTTTCCAGACTCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt < 2:155864/150‑1 (MQ=11) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:806619/1‑134 (MQ=33) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 2:1329515/150‑1 (MQ=35) cAAACCATTACAGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 2:187218/1‑150 (MQ=25) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAt > 2:1112786/1‑143 (MQ=33) cctttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGGCGATTTCCAGACCCCA‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTGCGAGCAACTGACCCCGAATCCGACCCCgg < 2:222856/147‑1 (MQ=255) ccgttgccGTTGAAGGCGGGAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTGCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg < 2:871429/144‑1 (MQ=11) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc > 1:1933044/1‑150 (MQ=38) aCCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAg < 2:1577619/150‑1 (MQ=39) ctgTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTT‑CACACCAAGCGCGAATGACGTCTACAACAACGGGTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTACTTTAGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 2:1390154/148‑1 (MQ=11) ccGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa > 1:937610/1‑150 (MQ=38) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAcag > 1:1390154/1‑148 (MQ=38) tGAAGCCGGCAAGACCCAGGTCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 1:1123228/150‑1 (MQ=37) tGAAGCCGGCAAGACCAAGGGCAGCGTCGATTGCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc < 2:449783/150‑1 (MQ=255) gAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACg < 1:1727197/150‑1 (MQ=38) acgCCGGCAAGCCCCAGGGCAACGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGa < 2:376981/148‑1 (MQ=255) ggCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTTCAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt < 1:1701227/149‑1 (MQ=255) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACACCACAGGCGCTAATTTCGAGGAACTGACCGCGAATCCGACCCCGGCTCAGACCACGATc > 2:1187574/1‑150 (MQ=255) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCa > 1:1093293/1‑150 (MQ=39) cGGCAAGACCCAGTGCAGCGTCGATTTCCAGACCCCG‑ACGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCCGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 2:818839/150‑1 (MQ=255) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:501017/108‑1 (MQ=32) cGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 2:1707008/150‑1 (MQ=38) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACg > 1:1025689/1‑150 (MQ=38) aGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAGCAACGACt < 2:1042577/150‑1 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg < 1:1160396/150‑1 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 1:1323129/1‑103 (MQ=33) ccAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 1:780408/150‑1 (MQ=35) ccAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGAACGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt > 1:1316542/1‑150 (MQ=25) cAGGGCAGCGTCGATTTCCAGCCCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 2:145917/150‑1 (MQ=25) cAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATAGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc > 2:126337/1‑150 (MQ=25) cAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATCACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGCATCCGACCCCCCCTCAGACCACGATCAACGACTGGGTc > 2:927911/1‑150 (MQ=11) cAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATAACGTCACCCCCACCCTGGTGTTCGTCATCGTCACCACCGCCGATGTCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTc < 1:435510/150‑1 (MQ=2) aGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCg > 1:845580/1‑150 (MQ=35) gggCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACTGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa < 2:214985/150‑1 (MQ=25) ggCAGCGTCGACTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:1287020/150‑1 (MQ=2) cAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGacac < 1:1460898/150‑4 (MQ=17) gCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACTACTCGGTCGATGcca < 1:1843297/150‑1 (MQ=255) gTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacc > 2:516495/1‑150 (MQ=40) gTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccacc > 1:1345978/1‑150 (MQ=255) aTTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 1:1848381/113‑1 (MQ=37) tttCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 1:887595/1‑150 (MQ=255) tttCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCCTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 1:1898326/1‑150 (MQ=255) cAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAcc < 2:1784401/150‑1 (MQ=255) aGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:746826/79‑1 (MQ=35) aGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 2:746826/1‑79 (MQ=35) aGACCCCG‑GCCAATGACGTCTACAACAACGGTTCGACGGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAccc > 2:1490182/1‑150 (MQ=255) ccccG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 2:1139713/1‑150 (MQ=255) cccG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 1:1040050/1‑150 (MQ=40) cccG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACAATCATCGACTCGGTCGATGCCACCACCGCGACCCTGAc < 1:1424442/150‑1 (MQ=255) ccG‑GCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 1:376095/1‑150 (MQ=255) ccG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 2:1000510/1‑150 (MQ=39) cG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACgg < 2:845580/150‑1 (MQ=255) ccaaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 1:1490182/148‑1 (MQ=38) cGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCTACTCCGACTCCGGCTCAGACCACAATCAACGACTCGGTCGTTGCCACCACCGCGACCCTGACGGCGa < 2:1240655/150‑1 (MQ=11) cGAATGACGTCTACAAAAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGCGCAACTGACCCCGACTCCGACCCCGGCTCAGACCAAGATCAACGAATATGTCCATGCCACCACCGCGACCCTGACGCCGa < 2:806177/150‑1 (MQ=11) tGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGccc < 1:1111913/150‑1 (MQ=255) aCGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCg > 2:471290/1‑113 (MQ=32) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCCCAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc < 1:1572554/150‑1 (MQ=38) cGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc < 1:1879680/150‑1 (MQ=39) gTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCg > 1:702483/1‑150 (MQ=255) caacaaCGGTTCGACCGTCAGCGTCACCATCGCGAACTGCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc < 2:1124269/150‑1 (MQ=255) caacaaCGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg > 1:1255235/1‑45 (MQ=38) aacaacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGCAACTTCGAGCAACTGACCCCGAATcc > 1:1199125/1‑74 (MQ=255) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt < 2:1201477/51‑1 (MQ=38) caacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACGCGGTCGATGCCACCACCGCGAGCCTGACGGCTAGCCCGTCGGTCACCGa > 2:1069788/1‑150 (MQ=255) aacGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt > 2:1093266/1‑108 (MQ=35) actgTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:1063743/147‑1 (MQ=38) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa < 1:858867/70‑1 (MQ=37) ggTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggc > 2:1606236/1‑150 (MQ=39) ttCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcgg > 1:62442/1‑150 (MQ=38) tCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCTAGCAACTGACCCCGAACCCGACCCCGGCCCAGACCATGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:1344646/150‑1 (MQ=11) tCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:1061317/150‑1 (MQ=39) cGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 2:1289939/1‑150 (MQ=38) gcccGTCAGCCTCACCATCGAGAACGCCACAGGTCCTGAATGCGAGCAACTGACCCCGCATCCGACCCCGGCTCAGACCACGAGCAACGCCTTGGTCGATGCCACCACCGCGACCCGGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 1:593167/148‑1 (MQ=11) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt > 1:533667/1‑150 (MQ=255) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc > 2:279648/1‑43 (MQ=38) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:279648/43‑1 (MQ=38) gACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGt < 1:1139713/150‑1 (MQ=39) aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTa > 1:1610194/1‑150 (MQ=40) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg > 1:1632568/1‑141 (MQ=39) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 2:1632568/141‑1 (MQ=39) cGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 2:62442/150‑1 (MQ=25) cGTCACCGACACCAGCAAGAACACCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt < 2:1898326/150‑1 (MQ=14) | GCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCG‑GCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAT > NC_002947/196910‑197181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |