BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,749,326	A→G	7.4%	H98R (CAC→CGC) ‡	PP_2405 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,749,326	0	A	G	7.4%	298.9 / 8.6	104	H98R (CAC→CGC) ‡	PP_2405	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (52/44); new base G (4/4); total (56/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01

Only 100 of 108 total aligned reads displayed.

GCCGCCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTTGTCG  >  NC_002947/2749177‑2749475

gccgccCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGca                                                                                                                                                       >  1:1063858/1‑150 (MQ=255)

    ccccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCAGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGCGGACAcc                                                                                                                                                   >  1:623813/1‑150 (MQ=255)

     cccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAccc                                                                                                                                                  >  1:892062/1‑150 (MQ=255)

     cccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAccc                                                                                                                                                  >  2:256936/1‑150 (MQ=255)

      ccTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAcccc                                                                                                                                                 <  2:237863/150‑1 (MQ=255)

       cTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCt                                                                                                                                                >  1:1596804/1‑150 (MQ=255)

         ggATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                              <  2:1713786/150‑1 (MQ=255)

          gATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGTGCACCCCtacc                                                                                                                                             <  1:1622118/150‑4 (MQ=255)

              ccccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGAACACCCCTGAGTTCg                                                                                                                                         >  2:696849/1‑150 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATTATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                        <  2:714695/150‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                              >  2:306464/1‑144 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                              <  1:306464/144‑1 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                        >  2:515839/1‑150 (MQ=255)

               cccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGa                                                                                                                                        <  2:1063858/150‑1 (MQ=255)

                ccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       >  1:1163439/1‑150 (MQ=255)

                ccGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGACGTTTATGAATGATTTGGCGCGGCGCTATGCCGATTAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       >  1:723428/1‑150 (MQ=255)

                     gCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCAGCATGTTAATGATTGGGCGCGGCGCTATGCCGATCAACGACTAGAGCATTTAGGGGTGCACACCCCTTAGTTCGACTACGa                                                                                                                                  <  1:1125112/150‑1 (MQ=255)

                      cTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAg                                                                                                                                 >  1:201440/1‑150 (MQ=255)

                       tCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       >  1:1540805/1‑143 (MQ=255)

                       tCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       <  2:1540805/143‑1 (MQ=255)

                         aaGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCat                                                                                                                              <  2:36697/150‑1 (MQ=255)

                          aGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatg                                                                                                                             >  2:1792632/1‑150 (MQ=255)

                          aGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatg                                                                                                                             >  1:624931/1‑150 (MQ=255)

                           gggCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCatga                                                                                                                            >  1:761762/1‑150 (MQ=255)

                            ggCAAGGTGGTGCTGTTGGCCTTCTGGACCTGGGACTGCATCAACTGCGGGCGCAGCCTGCCGCACGTGGAGGGTTGGGCGCGGCGTTATGCCGATCAAGGGTCGGTGGTGGTAGGGGTGCGCACCCCTGAGTTCGACTACGAGCatgat                                                                                                                           <  2:623813/150‑1 (MQ=255)

                                 ggtggtGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTACGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGc                                                                                                                      >  2:1487051/1‑150 (MQ=255)

                                  gtggtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCg                                                                                                                     >  1:1778757/1‑150 (MQ=255)

                                   tggtgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGa                                                                                                                    <  1:585980/150‑1 (MQ=255)

                                      tgCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACtt                                                                                                                 >  1:163900/1‑150 (MQ=255)

                                       gCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACttt                                                                                                                >  2:1522061/1‑150 (MQ=255)

                                         tggtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGc                                                                                                              >  2:311346/1‑150 (MQ=255)

                                          ggtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCg                                                                                                             <  1:1629777/150‑1 (MQ=255)

                                          ggtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCg                                                                                                             <  2:163900/150‑1 (MQ=255)

                                           gtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                            >  1:672290/1‑150 (MQ=255)

                                           gtggACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCgg                                                                                                            <  1:515839/150‑1 (MQ=255)

                                              gACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATTAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGAc                                                                                                         <  2:723428/150‑1 (MQ=255)

                                                  tCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAgg                                                                                                     <  2:1778757/150‑1 (MQ=255)

                                                      gACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGc                                                                                                 >  1:789102/1‑150 (MQ=255)

                                                         cTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCg                                                                                              >  1:1039877/1‑150 (MQ=255)

                                                           gggACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACAccc                                                                                                                                                  <  1:499278/96‑1 (MQ=255)

                                                              aCTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgg                                                                                         >  1:677929/1‑150 (MQ=255)

                                                              aCTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGAGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgg                                                                                         <  1:1100898/150‑1 (MQ=255)

                                                                 gCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggta                                                                                      >  1:131281/1‑150 (MQ=255)

                                                                     cAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgg                                                                                  >  1:1092039/1‑150 (MQ=255)

                                                                      aaCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcggg                                                                                 >  2:1315985/1‑150 (MQ=255)

                                                                       aCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGa                                                                                                                    >  1:1185563/1‑114 (MQ=255)

                                                                       aCTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGa                                                                                                                    <  2:1185563/114‑1 (MQ=255)

                                                                        cTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTgggtatcgggta                                                                               >  1:827758/1‑150 (MQ=255)

                                                                           ccGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       <  1:1034521/91‑1 (MQ=255)

                                                                           ccGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGAc                                                                                                                                       >  2:1034521/1‑91 (MQ=255)

                                                                             ggCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCgg                                                                          >  1:471409/1‑150 (MQ=255)

                                                                              gcgcAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCg                                                                                                             <  2:865753/114‑1 (MQ=255)

                                                                              gcgcAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGt                                                                         <  1:269877/150‑1 (MQ=255)

                                                                                    ccTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGt                                                                   <  1:1286394/150‑1 (MQ=255)

                                                                                     cTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTa                                                                  >  2:391467/1‑150 (MQ=255)

                                                                                     cTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTa                                                                  <  2:471409/150‑1 (MQ=255)

                                                                                     cTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGAGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTa                                                                  >  2:1401048/1‑150 (MQ=255)

                                                                                         cGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATa                                                              <  2:1039877/150‑1 (MQ=255)

                                                                                           gaTGTGAATGAGTGGGCGGGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAAt                                                            <  2:761762/149‑1 (MQ=255)

                                                                                           cATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAAt                                                            <  1:1315985/150‑1 (MQ=255)

                                                                                             tgtgAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCTCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                          <  2:1483452/150‑1 (MQ=255)

                                                                                             tgtgAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGa                                                          <  2:624931/150‑1 (MQ=255)

                                                                                                gAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCacac                                                                                                                                                    <  1:185040/57‑1 (MQ=255)

                                                                                                gAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCacac                                                                                                                                                    >  2:185040/1‑57 (MQ=255)

                                                                                                gAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTa                                                       >  2:1084364/1‑150 (MQ=255)

                                                                                                gAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTa                                                       >  2:1652259/1‑150 (MQ=255)

                                                                                                 aaTGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                              <  1:1199340/62‑1 (MQ=255)

                                                                                                 aaTGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGa                                                                                                                                              >  2:1199340/1‑62 (MQ=255)

                                                                                                    gactgcgcgcggcggTATGCCGACCAGGGGCTGGTGGTGGTGGGGGTGCATACGCCGGAGTACGACTACGAGCATGATGTGGGCACCTTGCGGGACAAGGTGGCCGGGCTGGGGATCGGTTACCCGGTGGCGGTTGACAACGATTACAAg                                                   <  1:1444691/144‑1 (MQ=255)

                                                                                                    gATTTGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACaa                                                                                                       >  2:1497349/1‑98 (MQ=255)

                                                                                                    gATTTGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACaa                                                                                                       <  1:1497349/98‑1 (MQ=255)

                                                                                                    gATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAg                                                   <  2:827758/150‑1 (MQ=255)

                                                                                                    gATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAg                                                   >  2:1901092/1‑150 (MQ=255)

                                                                                                     aTTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTAGAAgg                                                  >  1:750899/1‑150 (MQ=255)

                                                                                                         ggcgcggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGtgtg                                              <  2:1596804/150‑1 (MQ=255)

                                                                                                          gcgcggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTgg                                             <  2:201440/150‑1 (MQ=255)

                                                                                                          gcgcggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTgg                                             >  1:60424/1‑150 (MQ=255)

                                                                                                          gcgcggcgcTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTgg                                             <  1:391467/150‑1 (MQ=255)

                                                                                                                    aTGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTggg                                   <  1:311346/150‑1 (MQ=255)

                                                                                                                     tGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTTGCGGTAGATAATGAATACAAGGTGTGGAATGCCTgggg                                  >  1:849398/1‑150 (MQ=255)

                                                                                                                           tCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTgg                                             <  1:1538681/133‑1 (MQ=255)

                                                                                                                           tCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTgg                                             >  2:1538681/1‑133 (MQ=255)

                                                                                                                             aaGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGt                          <  2:677929/150‑1 (MQ=255)

                                                                                                                              aGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGtt                         <  1:1901092/150‑1 (MQ=255)

                                                                                                                                ggCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCt                       <  1:1522061/150‑1 (MQ=255)

                                                                                                                                ggCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCt                       <  2:131281/150‑1 (MQ=255)

                                                                                                                                 gCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTg                      >  2:1374871/1‑150 (MQ=255)

                                                                                                                                     gtggtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCg                  >  1:729726/1‑150 (MQ=255)

                                                                                                                                       ggtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgc                <  2:789102/150‑1 (MQ=255)

                                                                                                                                       gaactcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgc                >  2:1559075/7‑150 (MQ=255)

                                                                                                                                        gtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgcg               >  2:1715668/1‑150 (MQ=255)

                                                                                                                                        gtggtAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGgcg               >  2:1580045/1‑150 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTgg                                    <  2:381895/124‑1 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTgg                                    >  1:381895/4‑127 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGtt                         <  1:1548156/135‑1 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGtt                         >  2:1548156/4‑138 (MQ=255)

                                                                                                                                          ctcaGGGGTGTGCACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCa             >  1:1563616/4‑150 (MQ=255)

                                                                                                                                             atgggAGCACACACCTGAGTTCGACTGGGAGCATGATGGGGCGACTTTGCTGGACAAGGTAGCCCGGTTAGGGATCGGGTATCCGGTGGCGGTAGATAATGACTAAAAGGTGTGGAATGCCTGAGGCAGCCAGTTCTGGCCGGCGCATTa          >  2:564848/3‑150 (MQ=255)

                                                                                                                                                 gTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACttt      >  1:1638062/1‑150 (MQ=255)

                                                                                                                                                     acacCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTTGTCg  >  1:214095/1‑150 (MQ=255)

GCCGCCCCTGGATGCCCCGGGGCTCAAGGGCAAGGTGGTGCTGGTGGACTTCTGGACCTGGGACTGCATCAACTGCCGGCGCAGCCTGCCGCATGTGAATGATTGGGCGCGGCGCTATGCCGATCAAGGGCTGGTGGTGGTAGGGGTGCACACCCCTGAGTTCGACTACGAGCATGATGTGGCGACTTTGCGGGACAAGGTAGCCCGGTTGGGTATCGGGTATCCGGTGGCGGTAGATAATGACTACAAGGTGTGGAATGCCTGGGGCAACCAGTTCTGGCCGGCGCATTACTTTGTCG  >  NC_002947/2749177‑2749475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`