Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,882,557 C→T 5.7% intergenic (+2/‑78) PP_2537 → / → PP_2538 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,882,5570CT 5.7% 354.8 / 6.7 117intergenic (+2/‑78)PP_2537/PP_2538hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (56/54);  new base T (3/4);  total (59/58)
Fisher's exact test for biased strand distribution p-value = 7.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01

Only 100 of 121 total aligned reads displayed.

GAGATCACCCGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGGCCGCCTA  >  NC_002947/2882409‑2882705
                                                                                                                                                     |                                                                                                                                                     
  gaTCACCCGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCAAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CTTCAGTCGCGCGAATTCTGGGGCGAAGCCTAGCCAgg                                                                                                                                                    <  2:1677147/150‑1 (MQ=255)
     cACCCGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCtt                                                                                                                                                 >  2:1737054/1‑150 (MQ=255)
      aCCCGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑g                                                                                                                                               >  2:1890305/1‑150 (MQ=255)
        ccGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGC‑GGGGCGAAGCCTAGCCAGGCTT‑GCCt                                                                                                                                            >  2:32443/1‑150 (MQ=255)
           cAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGC‑AAGCCTGGCTAGGCttcgccccc                                                                                                                                          <  2:1097035/150‑8 (MQ=255)
           cAAGGCCATCGACAGGCCTGACGACCGACAGGTGATGATGAAGGCCACGTATTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTgg                                                                                                                                          <  2:371986/150‑1 (MQ=255)
                     gACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGaa                                                                                                                                <  1:1565642/150‑1 (MQ=255)
                      aCAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAAc                                                                                                                               <  2:1835848/150‑1 (MQ=255)
                      aCAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAAc                                                                                                                               >  1:1081500/1‑150 (MQ=255)
                        aGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACtt                                                                                                                             <  2:871808/150‑1 (MQ=255)
                        aGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACtt                                                                                                                             <  1:328231/150‑1 (MQ=255)
                             tGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATCGCCAAGTCACTGATCGACGGCCAAATGCTGCAGATA‑CGCCAGGCGCGCACAGGCGGGGGCTACGGCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCAc                                                                                                                        >  2:952272/1‑150 (MQ=255)
                                   ccGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTGGCTAGGCttcgcc                                                                                                                                             >  2:849767/1‑120 (MQ=255)
                                       cAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCgg                                                                                                              >  1:664205/1‑150 (MQ=255)
                                         ggTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGtt                                                                                                            <  2:1035813/150‑1 (MQ=255)
                                           tgatgatgaAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGtttt                                                                                                          >  2:847855/1‑150 (MQ=255)
                                             atgatgaAGTCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTaa                                                                                                        <  1:1537610/150‑1 (MQ=255)
                                                atgaAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCg                                                                                                     >  1:1240388/1‑150 (MQ=255)
                                                  gaAGGCCACGTACTATCAGTCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTc                                                                                                   >  1:559112/1‑150 (MQ=255)
                                                   aaGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCt                                                                                                  <  1:847855/150‑1 (MQ=255)
                                                    aGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTg                                                                                                 <  2:1281928/150‑1 (MQ=255)
                                                     ggCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAg                                                                                                                                                     >  1:135475/1‑98 (MQ=255)
                                                      gCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGACGGTTTTAACCGTcatta                                                                                               <  2:483282/150‑5 (MQ=255)
                                                       ccACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACtt                                                                                                                             <  1:886588/119‑1 (MQ=255)
                                                       ccACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACtt                                                                                                                             >  2:886588/1‑119 (MQ=255)
                                                           gTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTggg                                                                                                                 >  1:1670717/1‑127 (MQ=255)
                                                           gTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTggg                                                                                                                 <  2:1670717/127‑1 (MQ=255)
                                                           gTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACg                                                                                          >  2:1897446/1‑150 (MQ=255)
                                                              ctacCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACa                                                                                       <  1:105978/150‑1 (MQ=255)
                                                               tacCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGa                                                                                         >  1:406529/1‑147 (MQ=255)
                                                               tacCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGa                                                                                         <  2:406529/147‑1 (MQ=255)
                                                                 ccTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGttt                                                                                                           <  1:206291/127‑1 (MQ=255)
                                                                 ccTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGttt                                                                                                           >  2:206291/1‑127 (MQ=255)
                                                                 ccTGGCCGGGATGGCCAAGTCACTGATCGACGACCAGACGCTGCAGTCA‑TGTTAGCGGCGCGAAGGCTGTTACTGAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGaa                                                                                    >  1:528838/1‑150 (MQ=255)
                                                                   tGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑Gcc                                                                                                                                             >  2:75706/1‑91 (MQ=255)
                                                                   tGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑Gcc                                                                                                                                             <  1:75706/91‑1 (MQ=255)
                                                                   tGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAgg                                                                                  >  2:1243434/1‑150 (MQ=255)
                                                                       cGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGaaaa                                                                              >  2:442658/1‑149 (MQ=255)
                                                                        gggATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGC‑GGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACAt                                                                            <  1:32443/150‑1 (MQ=255)
                                                                           aTGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGc                                                                          >  1:538227/1‑150 (MQ=255)
                                                                           aTGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGc                                                                          <  1:158497/150‑1 (MQ=255)
                                                                              gCCCAGGCACTGACCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGCGAGAAGCCTAGCCAGGCTT‑GCATGGGGGGCGCGCACTTGGCACCCTAGGGCGCTTTTCATCGTCTTTAACACGACAGAAGGAAACATGCAtt                                                                       <  2:771523/150‑1 (MQ=255)
                                                                              gCCAAGTCACTGATCGACGACCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCAtt                                                                       <  2:528838/150‑1 (MQ=255)
                                                                                cAAGTCACTGATCGACGGCCAGCTGCTGTAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGa                                                                     >  1:1716941/1‑150 (MQ=255)
                                                                                      aCTGATCGACGGCCAGCTGCTGCAGATC‑CGTCAGGCGCGCGGCGGCCGGGGCGAGGCCTAGCCAGGCTT‑GCATGCGTGGCGCGAACTCGGCACCACGGAGCGGGGTTACTCGGCTGCAACACGACAGAAGGCAACCCGCATCGAgagggg                                                               >  1:1886601/1‑145 (MQ=255)
                                                                                      aCTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTggg                                                               <  1:11516/150‑1 (MQ=255)
                                                                                      aCTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTggg                                                               >  2:1015160/1‑150 (MQ=255)
                                                                                      aCTGATCGACGGCCAGCTGCTGCA‑ATATTTTGAGGCGCGCGAAGGCGGGGGCGAAGGCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGTGGTTTTAATCGTCTGTAACACGACAGAAGGAAAAATGCATTGAGCTggg                                                               >  1:942632/1‑150 (MQ=255)
                                                                                       cTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGa                                                              <  2:953940/150‑1 (MQ=255)
                                                                                       cTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGa                                                              <  1:1243434/150‑1 (MQ=255)
                                                                                        tGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCt                                                                                                  >  1:1210066/1‑113 (MQ=255)
                                                                                        tGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCt                                                                                                  <  2:1210066/113‑1 (MQ=255)
                                                                                         gATCGACGGCCAGCTGCTGCAGATA‑TGTCAGGCGCGCGAAGGCGGGGGGGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTgg                                                                <  1:1120286/146‑1 (MQ=255)
                                                                                         gATCGACGGCCAGCTGCTGCAGATA‑TGTCAGGCGCGCGAAGGCGGGGGGGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTgg                                                                >  2:1120286/1‑146 (MQ=255)
                                                                                          aTCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTa                                                                                                         <  1:1544166/104‑1 (MQ=255)
                                                                                          aTCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTa                                                                                                         >  2:1544166/1‑104 (MQ=255)
                                                                                          aTCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACaa                                                           <  1:1890305/150‑1 (MQ=255)
                                                                                          aTCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCAACATTTGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACaa                                                           >  1:1479357/1‑150 (MQ=255)
                                                                                           tCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAg                                                          >  1:1764258/1‑150 (MQ=255)
                                                                                             gACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCa                                                                                                                         >  1:1044513/1‑85 (MQ=255)
                                                                                             gACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGt                                                        >  1:812479/1‑150 (MQ=255)
                                                                                             gACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGCCGCGAACTTGGCa                                                                                                                         <  2:1044513/85‑1 (MQ=255)
                                                                                              aCGGCCGGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGGGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGGTTTAATCGTATGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTg                                                       >  2:822030/1‑150 (MQ=255)
                                                                                               cGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTgg                                                      <  1:1897446/150‑1 (MQ=255)
                                                                                                ggCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTggg                                                     <  2:1114212/150‑1 (MQ=255)
                                                                                                   cAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGt                                                                                                    <  1:1320482/100‑1 (MQ=255)
                                                                                                   cAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGt                                                                                                    >  2:1320482/1‑100 (MQ=255)
                                                                                                   cAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACa                                                                                       <  1:883433/113‑1 (MQ=255)
                                                                                                   cAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACa                                                                                       >  2:883433/1‑113 (MQ=255)
                                                                                                      ctgctgCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGtt                                                                                                            >  2:1732545/1‑89 (MQ=255)
                                                                                                      ctgctgCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGtt                                                                                                            <  1:1732545/89‑1 (MQ=255)
                                                                                                      ctgctgCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGCCACACTTCGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCt                                               <  2:1826793/150‑1 (MQ=255)
                                                                                                       tgctgcAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTCATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCt                                                                  >  2:750806/1‑130 (MQ=255)
                                                                                                          tgcAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTtctc                                           <  2:1516470/150‑1 (MQ=255)
                                                                                                          tgcAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTtctc                                           <  2:1764258/150‑1 (MQ=255)
                                                                                                          tgcAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTtctc                                           >  2:1280365/1‑150 (MQ=255)
                                                                                                               aTA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAg                                                          <  1:1927415/130‑1 (MQ=255)
                                                                                                               aTA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAg                                                          >  2:1927415/1‑130 (MQ=255)
                                                                                                                     tCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTg                                                                                                                            <  1:944800/59‑1 (MQ=255)
                                                                                                                     tCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTg                                                                                                                            >  2:944800/1‑59 (MQ=255)
                                                                                                                     tCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGc                                 >  1:1605350/1‑150 (MQ=255)
                                                                                                                     tCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGc                                 <  1:914937/150‑1 (MQ=255)
                                                                                                                       aGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCAtt                                                                       >  2:431757/1‑110 (MQ=255)
                                                                                                                       aGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCAtt                                                                       <  1:431757/110‑1 (MQ=255)
                                                                                                                             gcgAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTggg                                                     >  2:774664/1‑122 (MQ=255)
                                                                                                                             gcgAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTggg                                                     <  1:774664/122‑1 (MQ=255)
                                                                                                                               gAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCt                       <  1:1015160/150‑1 (MQ=255)
                                                                                                                                       caggcaaGCCTGGCTAGGCTTCGCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTc                >  1:1122725/6‑150 (MQ=255)
                                                                                                                                          gcaaGCCTGGCTAGGCTTCGCCT‑GGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTggg                                                     >  1:989979/3‑109 (MQ=255)
                                                                                                                                          cGAATCCTAGCCAGGCTT‑GCCTTGGTGGCGAGAACTTGGCACACCTCCGAGATCTTAATCGTCTGTAACACGACATAAGGAAACATGCATTGACCTGTCAAAAGGTGGGTAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGt            <  2:942632/150‑1 (MQ=255)
                                                                                                                                               ccTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAg                                                 >  2:1041274/1‑108 (MQ=255)
                                                                                                                                               ccTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAg                                                 <  1:1041274/108‑1 (MQ=255)
                                                                                                                                                cTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGgccg      >  2:1454101/1‑150 (MQ=255)
                                                                                                                                                   gCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTc                <  1:369388/137‑1 (MQ=255)
                                                                                                                                                   gCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTc                >  2:369388/1‑137 (MQ=255)
                                                                                                                                                   gCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGGCCGCCt   <  2:1479357/150‑1 (MQ=255)
                                                                                                                                                    ccAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTg          >  1:1137489/1‑142 (MQ=255)
                                                                                                                                                    ccAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTg          <  2:1137489/142‑1 (MQ=255)
                                                                                                                                                    ccAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGGCCGCCTa  <  2:1605350/150‑1 (MQ=255)
                                                                                                                                                    ccAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGGCCGCCTa  >  1:614829/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GAGATCACCCGCAAGGCCATCGACAGGCCTGACGACCGCCAGGTGATGATGAAGGCCACGTACTACCTGGCCGGGATGGCCAAGTCACTGATCGACGGCCAGCTGCTGCAGATA‑CGTCAGGCGCGCGAAGGCGGGGGCGAAGCCTAGCCAGGCTT‑GCCTGGGGGGCGCGAACTTGGCACCCTTGGGCGGTTTTAATCGTCTGTAACACGACAGAAGGAAACATGCATTGAGCTGGGACAAGGTGGGGAAGCTTCTCGTCGCCGTGCTGATCGGCCTGATGGTCCTGTTGGCCGCCTA  >  NC_002947/2882409‑2882705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑