| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,179 | A→G | 9.0% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,179 | 0 | A | G | 9.0% | 687.3 / 40.4 | 254 | V895V (GTA→GTG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base A (111/118); new base G (11/12); total (122/132) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01 | |||||||||||
Only 100 of 257 total aligned reads displayed.
ACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTT > NC_002947/197030‑197327 | aCCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTa > 1:1610194/1‑150 (MQ=40) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCTGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCGCCGAAGGCGGCGTAATCa > 2:1807242/1‑150 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCa > 2:1238102/1‑150 (MQ=255) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGTCCCCGAATCCGACCCCGGCCCAGACCACCATCACCGACTCGGTCAATGCCACCACAGCGGCCCTGCCGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCAc < 2:1242469/150‑1 (MQ=14) cAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCAc < 2:1930749/150‑1 (MQ=255) aGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCAcc < 2:1256181/150‑1 (MQ=255) gCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCt > 2:1485174/1‑150 (MQ=255) cGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTa > 1:1462415/1‑150 (MQ=40) cACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCCCCGAAGGCGGCGTAATCACCTacac > 2:129482/1‑150 (MQ=255) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGAt > 1:1223271/1‑138 (MQ=18) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGAt < 2:1223271/138‑1 (MQ=18) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:1051498/1‑150 (MQ=18) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGt > 1:1576230/1‑150 (MQ=14) aTCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGGCACCGAAGGCGGCGTGATCACTTACAcc > 2:645379/1‑147 (MQ=12) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGa > 2:776170/1‑150 (MQ=38) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGa > 1:55939/1‑150 (MQ=255) ccGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGACTCCGACCCCGGCTCAGACCAAGACAAACGGCTCGGTCGATGCCACCACCGCGACCCTTACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGTGa < 2:1675213/149‑1 (MQ=11) agaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 2:1524758/1‑150 (MQ=12) aaagacccaGGCGGTAATTTCGAGCAAATGACGCCGACTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTg > 2:1288923/8‑150 (MQ=11) aaCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTg > 2:1896807/1‑150 (MQ=38) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:1338499/150‑1 (MQ=12) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:1073643/150‑1 (MQ=12) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCCCCTACCCCGTGACCCCGa < 2:518025/150‑1 (MQ=255) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:1238102/150‑1 (MQ=255) aCGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 1:196334/150‑1 (MQ=255) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCaa > 1:192172/1‑150 (MQ=17) acaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAAt < 2:818424/150‑1 (MQ=38) caGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATc < 1:851128/150‑1 (MQ=37) gCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTg > 2:1448022/1‑150 (MQ=35) cGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGGCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGc > 1:909689/1‑150 (MQ=25) tAATTTCGAGCAACTGACCCCGAACCTGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCa < 1:1807242/150‑1 (MQ=255) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 1:1866412/1‑150 (MQ=35) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATc > 2:1030683/1‑114 (MQ=38) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACg < 1:16750/150‑1 (MQ=35) gAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:1065979/150‑1 (MQ=25) gAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 1:677998/1‑150 (MQ=25) atctaCTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 1:176759/146‑1 (MQ=17) gcgaCTGACCCCGAATCCGAGCCCGGCTCAGACCACGATCAACGACTCGGTGGATGCAACCACCGCGAGCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 1:536246/4‑150 (MQ=11) gCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGTCCAGACGCCGGt < 2:533667/150‑1 (MQ=255) cTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGCCGGCGAGCCCGTC‑GGGCACCGAGAGCGGCGTAGTGACCTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTaggt > 2:176759/1‑147 (MQ=11) aCCCCGAATCCGACCCCGGCTCACACCACGATCAACGGCTCGGTCGATGCCACCCCCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTg < 1:504927/150‑1 (MQ=255) ccccGAATCCGACCCCGGCTCAGACCACGATCAACGCCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 1:1584159/150‑1 (MQ=255) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc > 2:1606716/1‑129 (MQ=37) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 1:1606716/129‑1 (MQ=37) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc > 2:1702422/1‑150 (MQ=255) ccGAAGCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGa < 1:27642/148‑1 (MQ=255) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCa > 2:1613350/1‑130 (MQ=37) cGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAccc < 1:1519477/150‑1 (MQ=40) aaTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTg > 2:893154/1‑150 (MQ=40) aTCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt < 1:508528/150‑1 (MQ=40) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTg > 2:267242/1‑103 (MQ=38) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 2:1407811/1‑150 (MQ=38) gACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCaa > 2:1274872/1‑150 (MQ=38) ccccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTGATCAGCTACAGCGGGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCAACg < 2:1719417/150‑1 (MQ=11) aaccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGAc > 2:1302579/3‑103 (MQ=17) cccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCt > 2:734090/1‑105 (MQ=35) cccGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCt < 1:734090/105‑1 (MQ=35) gCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg > 1:1074702/1‑150 (MQ=35) gCTCAGACATCGCTCACCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGTGTCAGTCACGGGTCCTGA‑TCGTCGTAATCACCTACACCCTGACCCTGCGATATACTGCACTGGCTCCGGTAACCGTGACCCTGTCCAACGGCCAg < 1:1407811/150‑1 (MQ=2) aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatc > 1:225575/1‑150 (MQ=40) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:1615348/116‑1 (MQ=32) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGtg > 1:1658308/1‑118 (MQ=14) ccACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatca < 2:1040050/150‑1 (MQ=255) cACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACAcc > 2:293689/1‑85 (MQ=35) aCGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACt < 2:6957/150‑1 (MQ=255) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCt > 2:507869/1‑77 (MQ=35) aTCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 2:693380/91‑1 (MQ=34) aaCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGTCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGaa > 1:701024/1‑150 (MQ=255) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGtcatc > 2:1782510/1‑140 (MQ=255) tCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTacac < 1:151220/71‑1 (MQ=35) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCaa > 2:1105627/1‑150 (MQ=255) tCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGACGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTANCCGTGACCCTGTCCAACGCCCAGGTCATCACTGTTGAAGCCGGCaaaa < 1:1288923/150‑1 (MQ=255) ccaccaCCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAgg < 1:1702422/150‑1 (MQ=255) caccacCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg < 1:1773418/150‑1 (MQ=255) caccacCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAggg < 2:1629048/150‑1 (MQ=255) accaccGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAg > 1:775375/1‑117 (MQ=39) accaccGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCAGTGTTGAAGCCGGCAAAACCCAGGGc > 2:1901641/1‑150 (MQ=255) ccaccGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCa < 1:1733888/150‑1 (MQ=255) aCCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGTTCAGCAGCCGCTCCACCTGGCTCGGGGCGGCCGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 1:137268/1‑150 (MQ=17) tGACGGCGAGCCCGTA‑GGTCACCGTAGGCGGCGTTATCACCTGCACCGTGGCCTTGACCAATCCTGCCCAGAGGCCGGTAACCGGGAGTCTGTTCAACGGCCAGGGCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttagt < 1:1249481/150‑4 (MQ=14) aGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGCTGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg < 1:1901641/150‑1 (MQ=255) gCCAGTC‑GGTCTCCTAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg < 1:1000510/150‑1 (MQ=255) cccGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACt < 1:1324620/103‑1 (MQ=255) cccGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACt > 2:1324620/1‑103 (MQ=255) cccGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 1:964452/150‑1 (MQ=255) cccGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 1:69439/150‑1 (MQ=255) gTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 1:811718/1‑64 (MQ=37) gTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:811718/64‑1 (MQ=37) tC‑GGTCACCGAAGGCGGCTTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAAt < 1:315228/150‑1 (MQ=255) gTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGCCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 2:325641/150‑1 (MQ=255) gTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCATGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGAc < 1:129506/150‑1 (MQ=255) tCACCGAGGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCa < 1:1885282/85‑1 (MQ=255) tCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCa > 2:1885282/1‑85 (MQ=40) tCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACg < 2:1672874/150‑1 (MQ=255) aCCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGACCACAATAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTc > 1:117739/1‑150 (MQ=14) gcggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 2:1007094/1‑52 (MQ=38) gcggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt < 1:1007094/52‑1 (MQ=38) ggcgTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac > 1:332484/1‑150 (MQ=39) tAATCACCTACACCGTGCCCCTGAGCAAGCCTGCCCGGAGGCCTGTAACCGTGACGCTGTCCAACGGCCAGGTGATCACTTTTTAAGCCGGCAAGGCCCAGGTCGGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGtt < 2:137268/150‑1 (MQ=11) tAATCACCTACACCGTGACCCTGTGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACTCAACAAACAGAAGTTGGTAAGACCGCAAACCCCACGGCAGCGTCGATTTCCCGACCCCGGCCAATGACGTCTACAACAACGGtt < 2:559216/150‑1 (MQ=2) | ACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTC‑GGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTT > NC_002947/197030‑197327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |