| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,992,339 | G→C | 5.1% | I259M (ATC→ATG) | PP_2616 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,992,339 | 0 | G | C | 5.1% | 242.0 / 4.0 | 79 | I259M (ATC→ATG) | PP_2616 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (44/31); new base C (2/2); total (46/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.38e-01 | |||||||||||
AGCGAGGCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTGGTGAATCAATGC > NC_002947/2992190‑2992488 | aGCGAGGCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCatggcg > 1:140969/1‑150 (MQ=32) gCGAGGCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCatggcga > 1:487362/1‑150 (MQ=32) ggCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCatggcgatggc < 2:1236976/150‑1 (MQ=32) gCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCatggcgatggcg > 1:792309/1‑150 (MQ=32) gCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCatggcgatggcg > 2:517387/1‑150 (MQ=32) aaaaaCCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCGCCGCCATGGCGATGGCGGa > 2:1272664/1‑150 (MQ=17) tCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGTCACCGCCATGGCGATGGCGGAAATCAcc > 2:1389615/1‑150 (MQ=38) tCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGAGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCAcc > 1:801370/1‑150 (MQ=255) tCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCGATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCAcc > 2:876835/1‑150 (MQ=38) gcgAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCaa > 2:396596/1‑150 (MQ=39) gcgAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCaa > 1:1148310/1‑150 (MQ=38) cGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTc < 1:396596/150‑1 (MQ=40) gTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATCGCCATGGCggtg > 2:58096/1‑132 (MQ=255) gTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATCGCCATGGCggtg < 1:58096/134‑3 (MQ=12) tGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTccac < 2:140969/150‑1 (MQ=40) tCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGTCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAggg < 1:1389615/150‑1 (MQ=255) aGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGcc > 1:695770/1‑150 (MQ=255) aGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGcc > 2:1287696/1‑150 (MQ=255) tggtgCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCAt < 2:1622204/150‑1 (MQ=255) tgtgACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCgg > 2:228864/1‑150 (MQ=255) acGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATg < 2:1606706/150‑1 (MQ=255) cGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGc < 1:1384540/150‑1 (MQ=255) ttGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGa > 1:589399/1‑150 (MQ=255) ttGCTGCAAAATGCCGTTCAGCGACTTCGACACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTACACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCg > 1:1021734/1‑150 (MQ=255) ttGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCg > 1:1919073/1‑150 (MQ=255) tgcAAAATGCCTTTCAGCGACTCCAGCACCGCGTTTTTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACAGCCATGGCGATGGCGGAAATCACCAAGGCGCCCCACCAGGGCCATTTCCGGCTCATGCGGAAGTTGCG‑Tggg > 2:1088661/1‑150 (MQ=17) cGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTgg > 2:1344312/1‑150 (MQ=255) gTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑Tggg > 1:1321931/1‑139 (MQ=255) gTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑Tggg < 2:1321931/139‑1 (MQ=255) gTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGgt < 1:876835/150‑1 (MQ=255) gTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCAATGCCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCGCATGCGGAAGTTGCG‑TGGGGCCACATTGgt > 1:124668/1‑150 (MQ=255) ttCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAgg > 2:1034238/1‑106 (MQ=255) ttCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAgg < 1:1034238/106‑1 (MQ=255) aGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATg < 2:121820/120‑1 (MQ=255) aGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATg > 1:121820/1‑120 (MQ=255) ccAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGc > 1:272465/1‑150 (MQ=255) cAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAg > 1:1769091/1‑142 (MQ=255) cAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAg < 2:1769091/142‑1 (MQ=255) cTCGGTTGTGATCAGGTGCAGGCGGTAGCTGGAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGActtc > 1:74828/1‑150 (MQ=255) tCGGTTGTGATCAGGTGCAGGCGGTAGCTGTATATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGcc < 2:1233519/91‑1 (MQ=255) tCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGcc > 1:1233519/1‑91 (MQ=255) ttGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCgg > 2:1221981/1‑150 (MQ=255) ttGTGATCAGGTGCAGGAGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCgg < 2:801370/150‑1 (MQ=255) tgtgATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCggg < 1:1344312/150‑1 (MQ=255) gtgATCAGGTGGAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCgggg < 2:95889/150‑1 (MQ=255) tCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAg > 2:357204/1‑150 (MQ=255) tCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAg > 2:1207788/1‑150 (MQ=255) tCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAg < 2:695770/150‑1 (MQ=255) tCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCA‑AAGAGCGTCGTGTTGGGGCCACATTGGTGGAGGGGTCGCAGACTTCTTCGGGGGCAg > 2:51791/1‑150 (MQ=17) tCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGAACGGAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAg < 1:1088661/150‑1 (MQ=255) ggTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGGCTTCTTCGGGGGTAGGGc > 2:755390/1‑150 (MQ=255) gTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGcc < 2:589399/150‑1 (MQ=255) gCAGGCGGTAGTTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCcgc < 1:731003/150‑1 (MQ=255) gCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCcgc > 1:768074/1‑150 (MQ=255) gCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCAACCGTCGCCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCcgc > 1:1320701/1‑150 (MQ=18) aGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCgcgc > 2:108074/1‑150 (MQ=255) gCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAg > 2:190564/1‑150 (MQ=255) cGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAg < 1:1098459/90‑1 (MQ=255) cGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAg > 2:1098459/1‑90 (MQ=255) gCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTcgcg < 2:768074/150‑1 (MQ=255) gCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTcgcg < 1:1287696/150‑1 (MQ=255) tGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGga < 1:1272664/150‑1 (MQ=255) gTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTg > 1:1695866/1‑100 (MQ=255) gTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTg < 2:1695866/100‑1 (MQ=255) gTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCgggg < 1:303273/127‑1 (MQ=255) gTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCgggg > 2:303273/1‑127 (MQ=255) gTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCAATGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGGGTAGGGGTCGCAGACTTCTACGAAAGAAGGGCCGCGCAGTTCGCGgat > 2:449153/1‑150 (MQ=18) gTAGATCCCGTAGGCCACCGCCATGCCGAGGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTACCGGCTCATGCGGAAGTTGCG‑TGGGTCCACATTGGTGTAGAGGGCGCAGACTCGTCCGGGGGTAGGGCCGCGCAGTGCGCGgat > 2:439183/1‑150 (MQ=18) tAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAggg < 2:1069528/107‑1 (MQ=255) tAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑GGGGGCCACATTGGTGTAggg > 1:1069528/1‑107 (MQ=255) gATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCAGGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTGGCAGACTTCTTCGCGGGTAGGGACGCGCAGTTCGCGgatgat > 2:578661/1‑150 (MQ=255) tCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTa > 2:275311/1‑125 (MQ=255) tCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTa < 1:275311/125‑1 (MQ=255) ccGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCCTTGCTGGCTCATGCGAACGTTGCG‑GGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCg > 1:726257/1‑150 (MQ=17) cGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGt > 1:637977/1‑150 (MQ=255) aGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCCAGGACGACGGCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCa < 2:1021734/150‑1 (MQ=18) gCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCACAGTTCGCGGATGATCCCGTGCAGt > 1:1811418/1‑150 (MQ=255) cACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTg > 2:1163223/1‑150 (MQ=255) tccGCCATCGCCATGGCGGAAATCACCAAGGGGCTCCACCAGGGCAATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAggg < 1:859605/91‑1 (MQ=37) tccGCCATCGCCATGGCGGAAATCACCAAGGGGCTCCACCAGGGCAATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAggg > 2:859605/2‑92 (MQ=255) aCCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTgg < 1:517387/150‑1 (MQ=255) aCCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTgg < 1:108074/150‑1 (MQ=255) ccATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTGGTGaa > 2:1354005/1‑150 (MQ=255) ccATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTGGTGaa < 1:1221981/150‑1 (MQ=255) gatggcgGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCAAATAGGCGTAGGGGTCGCAGACTTCTTCGGGGGTATGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTGGTGAATCAATGc > 1:919565/1‑150 (MQ=255) | AGCGAGGCAAAAACCTCGCGAATTCGTTGAACTCAGTGGTGCTGTGACACGGTTGGCTATTGCTGCAAAATGCCGTTCAGCGACTCCAGCACCTCGGTTGTGATCAGGTGCAGGCGGTAGCTGTAGATCCCGTAGGCCACCGCCATGGCGATGGCGGAAATCACCAAGGGGCTCCACCAGGGCCATTGCCGGCTCATGCGGAAGTTGCG‑TGGGGCCACATTGGTGTAGGGGTCGCAGACTTCTTCGGGGGTAGGGCCGCGCAGTTCGCGGATGATCCCGTGCAGTTGGTGAATCAATGC > NC_002947/2992190‑2992488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |