BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	3,227,829	C→A	5.4%	R209R (CGG→AGG)	PP_2828 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	3,227,829	0	C	A	5.4%	359.8 / 5.2	110	R209R (CGG→AGG)	PP_2828	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (51/53); new base A (3/3); total (54/56)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 112 total aligned reads displayed.

GATGCCAGGCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGA  >  NC_002947/3227682‑3227977

 aTGCCAGGCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGGGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGgc                                                                                                                                                     >  1:473117/1‑150 (MQ=255)

    ccAGGCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCa                                                                                                                                                  <  2:1481180/150‑1 (MQ=255)

     cAGGCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAg                                                                                                                                                 >  2:1038192/1‑150 (MQ=255)

        gCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCt                                                                                                                                              >  1:266894/1‑150 (MQ=255)

           ggAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCATgcg                                                                                                                                           >  2:1077565/1‑150 (MQ=255)

                cccTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCAGGCGCAGGCTGCGCCggg                                                                                                                                      <  2:1133797/150‑1 (MQ=255)

                 ccTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGGCt                                                                                                                                              <  2:1292188/141‑1 (MQ=255)

                 ccTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGc                                                                                                                                     >  2:1463412/1‑150 (MQ=255)

                   tgctgGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCg                                                                                                                                   >  1:903781/1‑150 (MQ=255)

                   tgctgGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCg                                                                                                                                   >  2:232434/1‑150 (MQ=255)

                   tgctgGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCg                                                                                                                                   >  1:1510014/1‑150 (MQ=255)

                      tgGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑g                                                                                                                               >  1:217196/1‑150 (MQ=255)

                       gggTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTgcgc                                                                                                                                          <  1:1066809/139‑1 (MQ=255)

                       gggTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTgcgc                                                                                                                                          >  2:1066809/1‑139 (MQ=255)

                       gggTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑Gt                                                                                                                              >  1:976876/1‑150 (MQ=255)

                       gggTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑Gt                                                                                                                              <  2:753951/150‑1 (MQ=255)

                          ttGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCa                                                                                                                          >  1:597303/1‑150 (MQ=255)

                           tGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCAt                                                                                                                         <  2:554430/150‑1 (MQ=255)

                                ccTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGgc                                                                                                                                                     >  2:1082995/1‑119 (MQ=255)

                                ccTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGgc                                                                                                                                                     <  1:1082995/119‑1 (MQ=255)

                                    tACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCAt                                                                                                                >  1:1536407/1‑150 (MQ=255)

                                     aCCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATg                                                                                                               <  1:1463412/150‑1 (MQ=255)

                                       cTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCa                                                                                                             >  1:1903651/1‑150 (MQ=255)

                                          gAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTg                                                                                                          >  2:1751227/1‑150 (MQ=255)

                                          gAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTg                                                                                                          <  2:597303/150‑1 (MQ=255)

                                           aGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGc                                                                                                         <  2:2105/150‑1 (MQ=255)

                                               ggcgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCa                                                                                                     <  1:1038192/150‑1 (MQ=255)

                                                gcgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCg                                                                                                                                                       >  2:428887/1‑101 (MQ=255)

                                                gcgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCg                                                                                                                                                       <  1:428887/101‑1 (MQ=255)

                                                gcgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAg                                                                                                    >  1:1350770/1‑150 (MQ=255)

                                                 cgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTTGCGTGGGCCCGGCGCAGCCTTCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGt                                                                                                   <  1:899341/150‑1 (MQ=255)

                                                 cgggcgCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCTGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGt                                                                                                   <  1:193852/150‑1 (MQ=255)

                                                     cgcCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGcccc                                                                                                                    <  1:335959/129‑1 (MQ=255)

                                                     cgcCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGcccc                                                                                                                    >  2:335959/1‑129 (MQ=255)

                                                        cGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCa                                                                                                        <  1:1488723/138‑1 (MQ=255)

                                                        cGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCa                                                                                                        >  2:1488723/1‑138 (MQ=255)

                                                        cGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTggc                                                                                            >  1:1427571/1‑150 (MQ=255)

                                                           ggTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTggcggc                                                                                         <  2:1427571/150‑1 (MQ=255)

                                                             ttCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCCTGCAGTGCACCACTCCCTGGCGgcgc                                                                                       >  2:1380530/1‑150 (MQ=255)

                                                              tCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCt                                                                                      <  1:483451/150‑1 (MQ=255)

                                                              tCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCt                                                                                      <  1:896495/150‑1 (MQ=255)

                                                                aGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGGCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTgg                                                                                    <  2:616319/150‑1 (MQ=255)

                                                                 ggCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGc                                                                                   >  1:471722/1‑150 (MQ=255)

                                                                   cGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGccc                                                                                 <  2:429470/150‑1 (MQ=255)

                                                                     ttGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCaa                                                                               <  2:122895/150‑1 (MQ=255)

                                                                      tGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAg                                                                              <  2:399213/150‑1 (MQ=255)

                                                                      tGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAg                                                                              <  1:1114814/150‑1 (MQ=255)

                                                                        caggcagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGcc                                                                                                                                    <  1:264185/96‑1 (MQ=255)

                                                                        caggcagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGcc                                                                                                                                    >  2:264185/1‑96 (MQ=255)

                                                                          ggcagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑Gt                                                                                                                              <  2:1698733/99‑1 (MQ=255)

                                                                          ggcagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑Gt                                                                                                                              >  1:1698733/1‑99 (MQ=255)

                                                                           gcagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCAGGCGCAGGCTGCGccgg                                                                                                                                       >  2:1632154/1‑88 (MQ=255)

                                                                            cagCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGAAAAGAATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGa                                                                        <  2:1827403/150‑1 (MQ=255)

                                                                                  tGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCACGCCCTGAGCCGAt                                                                  >  2:629827/1‑150 (MQ=255)

                                                                                   gCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGAtt                                                                 <  2:217196/150‑1 (MQ=255)

                                                                                   gCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCAGGCGCAGGCTGCGCCGGGccc                                                                                                                                   <  2:1025040/86‑2 (MQ=38)

                                                                                   gCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCAGGCGCAGGCTGCGCCGGGccc                                                                                                                                   >  1:1025040/1‑85 (MQ=38)

                                                                                      tCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCa                                                              >  2:623189/1‑150 (MQ=255)

                                                                                        ctaaTGCGTTGGTCACCGCCATGCCCGGGCCCCGGCGGCGCCGATACCTGGCGTGCGCCCGGCGCAGCTTGCGCCAGTCCTGC‑GT‑GGATGCCTGGCATGCTGTTTACGAGTGCCTGGCGGCGCTGGACCCAGGGCTGGGCCGATTGCCCg                                                            <  2:811967/147‑1 (MQ=255)

                                                                                        ccGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACg                                                            >  1:1647632/1‑150 (MQ=255)

                                                                                         cGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACgg                                                           >  2:163556/1‑150 (MQ=255)

                                                                                           aTGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTg                                                         <  2:1647632/150‑1 (MQ=255)

                                                                                            tGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGc                                                        >  1:1761898/1‑150 (MQ=255)

                                                                                               gTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTg                                                                                              >  1:1286917/1‑109 (MQ=255)

                                                                                                ttGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGtt                                                    <  1:232434/150‑1 (MQ=255)

                                                                                                ttGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGtt                                                    >  2:443586/1‑150 (MQ=255)

                                                                                                ttGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑CCATGCCCCGCATGCAGTGCACCAGTCCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGtt                                                    <  2:774972/150‑1 (MQ=255)

                                                                                                 tGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTg                                                   <  1:1034003/150‑1 (MQ=255)

                                                                                                    tCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTgggg                                                >  1:995869/1‑150 (MQ=255)

                                                                                                    tCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCACAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTgggg                                                <  1:979254/150‑1 (MQ=255)

                                                                                                          ccATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCAc                                          >  2:297802/1‑150 (MQ=255)

                                                                                                               cccGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTg                                                         >  1:116592/1‑130 (MQ=255)

                                                                                                               cccGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTg                                                         <  2:116592/130‑1 (MQ=255)

                                                                                                               cccGGGCTCCAGCGGCGCCGATACCGGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGggt                                     <  2:352316/150‑1 (MQ=255)

                                                                                                                ccGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTg                                                         >  2:410804/1‑129 (MQ=255)

                                                                                                                ccGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGggtg                                    <  1:2108/150‑1 (MQ=255)

                                                                                                                ccGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCAAGGTGCTGTTGGGGGCGCACCGggtg                                    <  1:1514879/150‑1 (MQ=255)

                                                                                                                ccGGGCTCCAGAGGCGCTGATACCTGGCGTGGGCCCGGCGCAGCCTGCGACCGGGTTTCTGTATCTTGGGCCGCTT‑‑TGTGCACCAGTGGCGGGCCGCGATGGACCAAGGCCTGCGCCATTTTCACTGTGCTGTTGGGGGCGCACCGggtg                                    <  1:443586/150‑1 (MQ=255)

                                                                                                                  gggCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGggtggt                                  <  1:1898024/150‑1 (MQ=255)

                                                                                                                      tCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGc                              >  2:1692028/1‑150 (MQ=255)

                                                                                                                       ccAGCGGCGCCGAGACCTGGCGTGGGCCCGGCGCAGCCTGGGCCTGGCCGGC‑GG‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCa                             <  2:473117/150‑1 (MQ=255)

                                                                                                                        cAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCAc                            <  1:1751227/150‑1 (MQ=255)

                                                                                                                        cAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCAc                            >  2:475186/1‑150 (MQ=255)

                                                                                                                         aGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTg                                                                                     >  1:564220/1‑92 (MQ=255)

                                                                                                                               gcCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGa                          >  2:311178/1‑145 (MQ=255)

                                                                                                                               gcCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGa                          <  1:311178/145‑1 (MQ=255)

                                                                                                                                 cGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGtt                   >  1:251273/1‑150 (MQ=255)

                                                                                                                                 cGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGtt                   <  2:1510014/150‑1 (MQ=255)

                                                                                                                                  gATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTc                  >  1:498011/1‑150 (MQ=255)

                                                                                                                                    tACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACGAGTGCCTGGCGTGGCTGGCCCTAGGGCTGAGCGGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCa                <  2:266894/150‑1 (MQ=255)

                                                                                                                                     cccTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAg               <  2:1350770/149‑1 (MQ=255)

                                                                                                                                      ccTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAgg              >  2:1206709/1‑150 (MQ=255)

                                                                                                                                       cTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGgc             >  1:1694371/1‑150 (MQ=255)

                                                                                                                                       cTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGgc             >  1:1817310/1‑150 (MQ=255)

                                                                                                                                        tGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGgcg            >  2:1550856/1‑150 (MQ=255)

                                                                                                                                          acgccggCCAGGCGCAGGCTGCGCCGGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGcc          >  1:1551305/6‑150 (MQ=255)

                                                                                                                                                gCCCGGCGCAGCCTGCGCCTGGCCTGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCg    >  2:601428/1‑150 (MQ=255)

                                                                                                                                                gCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCg    >  2:1061549/1‑150 (MQ=255)

                                                                                                                                                  ccGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGa  >  1:845083/1‑150 (MQ=255)

                                                                                                                                                  ccGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGa  >  1:1145790/1‑150 (MQ=255)

GATGCCAGGCCGGAAGCCCTGCTGGGTTGCCGCCTGTACCTGGAGCTGGCGGGCGCCGTGGTTCAGGCGTTGCAGGCAGCGGTGCCTCCCGATGCGTTGGTCACCGCCATGCCCGGGCTCCAGCGGCGCCGATACCTGGCGTGGGCCCGGCGCAGCCTGCGCCTGGCCGGC‑GT‑GCATGCCCCGCATGCAGTGCACCAGTGCCTGGCGGCGCTGGCCCAAGGGCTGAGCCGATTGCACGGTGCTGTTGGGGGCGCACCGGGTGGTCAGCACGAGCCGGTTCCAGGCGCCGTACCGGA  >  NC_002947/3227682‑3227977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`