| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,935,321 | G→T | 5.6% | L46M (CTG→ATG) | PP_3467 ← | sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,935,321 | 0 | G | T | 5.6% | 224.6 / 2.4 | 71 | L46M (CTG→ATG) | PP_3467 | sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (34/33); new base T (2/2); total (36/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.45e-01 | |||||||||||
TTGCCCTGGCGCGCGACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTCCGG > NC_002947/3935173‑3935468 | ttGCCCTGGCGCGCGACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAgg > 2:1546825/1‑150 (MQ=255) tGCCCTGGCGCGCGACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGc < 2:485913/150‑1 (MQ=255) cccTGCCGCGCTTCCAGGTAGTCGAGGTCGGAGGTAACGTCATCGATCATCAGGCGGTTGCTCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTg < 2:820959/150‑1 (MQ=255) ccTGGCGCGCGACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTgc > 1:1432747/1‑150 (MQ=255) gcgcgACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTgagacgtg > 2:1180475/1‑143 (MQ=255) gcgcgACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGcc > 1:1028828/1‑150 (MQ=255) cgcgACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCa < 2:1232288/150‑1 (MQ=255) gTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTc > 1:672609/1‑150 (MQ=255) gTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTc > 1:156918/1‑150 (MQ=255) cGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGAtct < 2:1622542/150‑1 (MQ=255) cGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGAtct < 1:701043/150‑1 (MQ=255) gAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGc > 1:1770431/1‑141 (MQ=255) gAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGc < 2:1770431/141‑1 (MQ=255) gAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGAtctc < 1:1517388/150‑1 (MQ=255) cGGGGGTAACGGCATCGCTTACCAGGCGGTTGAGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGTACGACATGTTCGCCCTGCAGGCTGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTcgc < 2:375482/150‑1 (MQ=255) gggggTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTcgcg > 2:1713598/1‑150 (MQ=255) ggggTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCgcgc < 2:1432747/150‑1 (MQ=255) gggTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCgca > 1:1533498/1‑150 (MQ=255) agcagGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGt < 1:548367/150‑1 (MQ=255) gcagGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGtt > 1:801478/1‑150 (MQ=255) cagGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTc > 2:1669126/1‑150 (MQ=255) ttGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCCGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCg > 2:1203830/1‑150 (MQ=255) ttGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCg < 1:1713598/150‑1 (MQ=255) cgcTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTg < 1:381254/150‑1 (MQ=255) gcTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTgg > 1:1833861/1‑150 (MQ=255) cTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGc > 1:1152984/1‑150 (MQ=255) tCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGcc > 2:259799/1‑150 (MQ=255) cagcagcagGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTc < 2:1280952/135‑1 (MQ=255) cagcagcagGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTc > 1:1280952/1‑135 (MQ=255) agcagGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTc > 1:1748425/1‑150 (MQ=255) cagGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAg < 1:341195/150‑1 (MQ=255) gcgcAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCg < 2:156918/150‑1 (MQ=255) gcgcAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCAGCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCg < 2:1778636/150‑1 (MQ=255) aGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGcc > 1:818735/1‑150 (MQ=255) cccTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGAt < 2:1028828/150‑1 (MQ=255) ccTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCGGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAg < 2:776519/109‑1 (MQ=255) ccTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCGGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAg > 1:776519/1‑109 (MQ=255) tGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCg > 2:1143922/1‑150 (MQ=255) acgccccaggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGACTTCGCTGACCAGCTTCACGCGGACGCCGCGGGATTCGTGCAg > 1:1036753/5‑150 (MQ=255) aggcccaggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGACTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGc > 1:630711/1‑150 (MQ=255) ggccaggccGACCTGTTCGCGCGGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGAGCAGGATCCCGAGCGGTAGTTGGCCTAGGGTGGCTGGTTGCCGCCGGGCCTCGCGGGATTCGTGCAGCgg < 2:320565/148‑1 (MQ=255) gcccaggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCgg > 2:360141/1‑150 (MQ=255) cccaggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCggg > 1:151379/1‑150 (MQ=255) aggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCg < 1:1143922/150‑1 (MQ=255) ggccGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGt > 1:1449725/1‑150 (MQ=255) ggcGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTg < 1:329950/148‑1 (MQ=255) cTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGTGGGAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGGGGGATTCGTGAAGCGTGGCGTGGGCGtt > 1:120689/1‑150 (MQ=255) cTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGtt > 1:950033/1‑150 (MQ=255) tGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGt > 1:1360415/1‑130 (MQ=255) tGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGt < 2:1360415/130‑1 (MQ=255) gTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTg < 1:490249/150‑1 (MQ=255) ttCGCCCTGCAGGCAGTCCAGGCCGTGGCCCATGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGt > 2:1059078/1‑128 (MQ=255) ttCGCCCTGCAGGCAGTCCAGGCCGTGGCCCATGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGt < 1:1059078/128‑1 (MQ=255) ttCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGt < 2:1748425/150‑1 (MQ=255) ccTNCAGGCAGTCCAGGCCGTGGCCCAGGCTCNGGCGCCATGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGNCGGGCCTCGCGGGATTCNTGCAGCGGGTCGTGGGCGTTTGTTATaa < 1:1180475/150‑1 (MQ=255) ccTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATaa < 1:259799/150‑1 (MQ=255) ccTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATaa > 2:1760376/1‑150 (MQ=255) cTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAg < 1:1550329/150‑1 (MQ=255) cTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATATCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGAGGTTGTTATAAg > 1:834686/1‑150 (MQ=255) tGCAGGCAGTCCAGGCCGTGGCCCATGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTcgcg > 1:1652490/1‑113 (MQ=255) tGCAGGCAGTCCAGGCCGTGGCCCATGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTcgcg < 2:1652490/113‑1 (MQ=255) ggcagTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGGCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTc < 2:818735/150‑1 (MQ=255) gcagTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTTGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTcg > 2:1230523/1‑150 (MQ=255) cagTCCCGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTcgc < 1:709251/150‑1 (MQ=255) cagTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTcgc < 1:1016134/150‑1 (MQ=255) gCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATaa < 2:285707/134‑1 (MQ=255) gCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATaa > 1:285707/1‑134 (MQ=255) gCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTc > 2:1002051/1‑150 (MQ=255) gCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTc < 1:1669126/150‑1 (MQ=255) cccAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGCTAGTTCGCGTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTcc > 2:1141433/1‑150 (MQ=255) ccAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTCCg > 2:482619/1‑150 (MQ=255) cAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGATTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTCCgg < 1:1203830/150‑1 (MQ=255) | TTGCCCTGGCGCGCGACCAGGTAGTCGAGTTCGGGGGTAACGGCATCGATCAGCAGGCGGTTGCGCTCCAGCAGCAGGCGCAGGTCATGGCCCTGTTCCAGGCCCAGGCCGACCTGTTCGCCCTGCAGGCAGTCCAGGCCGTGGCCCAGGCTGCGGCGCCAGGAGGCGTCGATCTCGTCGCGCAGCATCCCTAGCGGTAGTTCGCCTTCGCTGGCCAGCTTCAGGCGGGCCTCGCGGGATTCGTGCAGCGGGTCGTGGGCGTTTGTTATAAGTTGTCGCGCCATTTTCTACTCCGG > NC_002947/3935173‑3935468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |