| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,832,099 | A→T | 5.5% | intergenic (+29/+123) | pvdS → / ← pvdY | alternative sigma factor/hydroxyproline acetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,832,099 | 0 | A | T | 5.5% | 223.6 / 4.4 | 76 | intergenic (+29/+123) | pvdS/pvdY | alternative sigma factor/hydroxyproline acetylase |
| Reads supporting (aligned to +/- strand): ref base A (35/35); new base T (2/2); total (38/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.74e-01 | |||||||||||
CCTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAA > NC_002947/4831950‑4832245 | ccTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGTTGTTGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGaa > 1:1879003/1‑150 (MQ=255) tGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGa < 1:1183639/150‑1 (MQ=255) cAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGATCCAGGTTCGCTCTGGc < 1:933074/150‑1 (MQ=255) gAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCtt < 2:1438550/150‑1 (MQ=255) ggACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTttg > 1:829315/1‑150 (MQ=255) aCATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTttgct > 1:186366/1‑150 (MQ=255) cATTGCCAAGGAACTGGGCGGAAGGCCGCCCTTGGTCAACTTCGTGATCCGCTCTGCGCTGGTGCATTGCCGCAAGACGTCCAGTCTCCAGGCCTGATGATGACTGCAAGTA‑AAC‑ACCAGAGCGAGTCTGGATGGCTCTCGGttttacat < 2:216422/150‑5 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCAGCGATGAACTGGTTCATTGCCGCATGACGTCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTttgcttg > 1:1206760/1‑150 (MQ=255) gAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAg > 1:984882/1‑150 (MQ=255) aCTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTa > 2:1339170/1‑150 (MQ=255) tGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCt < 2:1761688/129‑1 (MQ=255) tGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCt > 1:1761688/1‑129 (MQ=255) ggggCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATg < 2:364622/149‑1 (MQ=255) gCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGaa > 1:1078829/1‑109 (MQ=255) gCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGaa < 2:1078829/109‑1 (MQ=255) tATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGttt > 1:127521/1‑150 (MQ=255) aTCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGtttt < 2:409921/150‑1 (MQ=255) tCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCAAGCAGATGACTGCAAGCA‑CACGGCCCGCACCCACGT‑GATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTg > 1:1399767/1‑150 (MQ=255) gCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCa < 2:1930827/150‑1 (MQ=255) gACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAAt > 1:138913/1‑150 (MQ=255) ttGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGCTGACTGCAAGCA‑AAC‑GCCAGAGCGAACATGGCTCGCTCTCGCTTTTGCTTGCAGACCTAGTATGGTGTTTTGCCAATACgg > 2:169605/1‑150 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:186366/150‑1 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:694521/150‑1 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:1277479/150‑1 (MQ=255) tGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:829315/150‑1 (MQ=255) tCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAAc > 1:1627886/1‑92 (MQ=255) tCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAAc < 2:1627886/92‑1 (MQ=255) cAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAAt < 2:127521/150‑1 (MQ=255) cTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGTCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAAc > 1:1850036/1‑150 (MQ=255) cTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAAc < 1:1618931/150‑1 (MQ=255) ttCATGATCCGCGATGCGCTGGTGCATTGCCGCCGGACGTCCAGGCGCCAGGCCGAACGATGACTGCATGAACGAC‑G‑AACTGCCAGCGGTGCGCGGTTTCTCGGTTGCTTGCAGCGCTAGTATGGTGTTTTGCATATATGGCCAATAACt > 1:443524/1‑150 (MQ=255) cATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCg > 1:310604/1‑150 (MQ=255) tCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTttgc < 2:458182/101‑1 (MQ=255) tCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTttgc > 1:458182/1‑101 (MQ=255) ccGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTGGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCCGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATCCGGCCAATCACTCGCAgctc > 2:259254/1‑148 (MQ=255) gcgATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCaa > 2:843111/1‑150 (MQ=255) aTGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATg > 1:1495801/1‑111 (MQ=255) aTGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATg < 2:1495801/111‑1 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgc > 1:1212254/1‑150 (MQ=255) cTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGGTCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgcc < 2:1514722/150‑1 (MQ=255) tGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGAA‑AGC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg > 2:1441677/1‑150 (MQ=255) tGGTGCATTGCCGCAAAACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg > 2:818318/1‑150 (MQ=255) aTTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGtt < 2:1850036/150‑1 (MQ=255) aTTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGtt > 2:656440/1‑150 (MQ=255) ttGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTa > 1:1145963/1‑150 (MQ=255) gCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGATCCAGGTTCGctct > 1:1438119/1‑68 (MQ=25) gCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGATCCAGGTTCGctct < 2:1438119/68‑1 (MQ=25) gCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTc > 1:597520/1‑150 (MQ=255) aGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCaa < 1:1264433/101‑1 (MQ=255) aGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCaa > 2:1264433/1‑101 (MQ=255) gACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTa < 2:616187/150‑1 (MQ=255) gACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTa < 2:1879003/150‑1 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt > 1:28702/1‑150 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt > 1:229887/1‑150 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:1912844/150‑1 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:818318/150‑1 (MQ=255) ccAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:843111/150‑1 (MQ=255) aGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGa > 2:778167/1‑150 (MQ=255) gTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgcc > 1:1486332/1‑125 (MQ=255) gTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgcc < 2:1486332/125‑1 (MQ=255) gCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCACACAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca > 2:1910884/1‑150 (MQ=255) ccTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCacac < 1:616360/150‑1 (MQ=255) tGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAATGAAGGAAGGTATGGTCGTTATTTGTGAAACACCACACTa < 1:1910884/150‑1 (MQ=255) aaGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGc < 2:28702/150‑1 (MQ=255) taTGACTACAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCGCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGccc < 2:443524/149‑1 (MQ=255) tGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCt < 1:656440/150‑1 (MQ=255) gACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTa < 1:778167/150‑1 (MQ=255) tGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGTTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:430147/126‑1 (MQ=255) tGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGTTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt > 2:430147/1‑126 (MQ=255) tGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTAc < 1:1342031/148‑1 (MQ=255) tGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTACTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTAc > 2:1342031/1‑148 (MQ=255) caagca‑aAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCa < 2:1145963/150‑1 (MQ=255) aagca‑aAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAg > 1:1064820/1‑150 (MQ=255) gca‑aAA‑GCGAGAGCGATCCAGGTTCGCTCTGGCGTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCt > 2:1330756/1‑150 (MQ=37) aaC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGc > 2:1864775/1‑150 (MQ=255) aaC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGc > 1:1212191/1‑150 (MQ=255) agagCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGAt < 2:138913/150‑1 (MQ=255) cGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGaa < 2:984882/150‑1 (MQ=255) cGAACCTGGATCGCTCCCGCTGTTGCTTGCAGCGCTAGTATGGTGTGTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACCAGCCCCTACGTCAGCTTGCAACGATCGaa > 2:119509/1‑150 (MQ=255) aaCCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATg > 1:955663/1‑94 (MQ=255) aaCCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATg < 2:955663/94‑1 (MQ=255) | CCTTAATGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCA‑AAC‑GCCAGAGCGAACCTGGATCGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAA > NC_002947/4831950‑4832245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |