| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,917,404 | A→T | 7.1% | F25I (TTC→ATC) | ccmA ← | cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,917,404 | 0 | A | T | 7.1% | 302.6 / 11.2 | 99 | F25I (TTC→ATC) | ccmA | cytochrome c biogenesis ABC transporter ATP‑binding protein CcmA |
| Reads supporting (aligned to +/- strand): ref base A (42/49); new base T (3/4); total (46/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
GCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGCCCCG > NC_002947/4917256‑4917551 | gCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGaaa < 2:1422264/150‑1 (MQ=255) aCGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAg < 1:1128028/150‑1 (MQ=255) gCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCt > 2:1682331/1‑150 (MQ=255) tGTTCTGCGAGGGGCTTGCCACCCAGCAGAAGCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGNCACTGANCTGCAGCATGTCNCCGGCGCC‑‑CAGCTCGAAATCGAGCTGt < 1:1068597/150‑1 (MQ=255) tGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGt < 1:756634/150‑1 (MQ=255) ttCTGCCGGGGGCGTGCCACCCAGCGGAATCTGCCCGGCCGTGGGCTTCATCAGCCCGGCGAGCAGGTGCAACAGGCTGGTCTTGCTGCTGCCGTTGGGGCCACTGATCTGCAGCATGGCGCCGGCGCC‑‑CAGCTCGATGTCGAGCttggc < 2:255187/150‑5 (MQ=255) ttCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTc < 1:1673732/150‑1 (MQ=255) ttCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTc > 1:150006/1‑150 (MQ=255) cTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGa > 1:825398/1‑150 (MQ=255) gCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGaaa < 2:376437/135‑1 (MQ=255) gCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGaaa > 1:376437/1‑135 (MQ=255) ggggCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAAcagca < 2:150006/150‑1 (MQ=255) gggCTTGCCCCCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATTTGCAGCATGTCGCCGGCACC‑‑CAGCTCAAAGGCAAGCTGTTCGGAcaggag > 2:771575/1‑150 (MQ=255) ttGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGgcgc < 2:1723395/150‑1 (MQ=255) aCCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc > 2:541524/1‑150 (MQ=255) aCCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTc < 1:1211321/150‑1 (MQ=255) aCCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCACTc < 1:1934386/150‑1 (MQ=255) gcagAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTAGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCt > 2:232857/1‑150 (MQ=255) agAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCg > 1:1028577/1‑150 (MQ=255) agAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCg > 1:1028576/1‑150 (MQ=255) agAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCg < 2:869253/150‑1 (MQ=255) aaTCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCCGGCTG‑‑CATTGCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGca < 1:1320647/150‑1 (MQ=255) tCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcagg > 1:1281248/1‑150 (MQ=255) ccGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggccagg > 2:1427669/1‑150 (MQ=255) cGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggccaggc > 2:880689/1‑150 (MQ=255) cGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGcaggccaggc < 1:1421206/150‑1 (MQ=255) cGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCcgc < 1:1093984/150‑1 (MQ=255) gTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCcgcg < 2:1099967/150‑1 (MQ=255) gCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAAca < 2:268326/111‑1 (MQ=255) gCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAAca > 1:268326/1‑111 (MQ=255) tGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTgg < 2:825398/150‑1 (MQ=255) tGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTgg < 1:541524/150‑1 (MQ=255) tGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATATGGCCGGCGCC‑‑CAGCTCGACATAGAGCTGTTCTAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTgg > 1:1400250/1‑150 (MQ=255) tCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGc < 2:475558/95‑1 (MQ=255) tCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGc > 1:475558/1‑95 (MQ=255) tCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGt > 1:1158569/1‑150 (MQ=255) gCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGATTTCGAGCTgg < 1:938626/95‑2 (MQ=255) gCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGATTTCGAGCTgg > 2:938626/1‑94 (MQ=255) cGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAggg > 2:462540/1‑150 (MQ=255) cGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTCCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCACGCGGCTTGGAGGTGAAggg > 2:384530/1‑150 (MQ=255) ccAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCa < 1:880689/150‑1 (MQ=255) cagcagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCAc < 1:1682331/150‑1 (MQ=255) agcagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCCGGCCCGCGGCTTGGAGGTGAAgg > 2:451459/1‑144 (MQ=255) agcagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAgg < 1:451459/144‑1 (MQ=255) cagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGATTTCGAGCTgggc < 2:1919105/87‑4 (MQ=39) cagGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGATTTCGAGCTgggc > 1:1919105/1‑84 (MQ=39) cagGCGCAACAGGCTGGTCTTGACGCTGCCGTTTTGGCCATGGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGt < 1:821049/150‑1 (MQ=255) gcgcAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCGGCGGCTTGGGGGTGAAGGGTCACGGTTTc > 1:1093732/1‑150 (MQ=255) gcgcAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTc < 2:1860926/150‑1 (MQ=255) gcgcAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGGGAAGGGTCACGGTTTc > 1:922307/1‑150 (MQ=255) ccgcAACAGTCCGTGCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCAAGT‑TCCTGTGACTGGAGTTCAGAAGTG‑GGTCTTCGAACTTTACGCGCCTGTCGCGCTTGCTGGCCTCGCTCGCTGCTTGGAGGTGAAGGGTCACGGTTTc < 1:925613/149‑1 (MQ=255) gcAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAggg < 2:831765/138‑1 (MQ=255) gcAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGc < 1:1427669/150‑1 (MQ=255) aCAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGaa > 1:1563059/1‑82 (MQ=255) aCAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGaa < 2:1563059/82‑1 (MQ=255) cAGGCTGGTCTTGCCGCTGCCGTTGGCGCGACTGATCTGCAGCATGTCGCCGGGGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGTTTTCGCCTTa < 1:1858554/150‑1 (MQ=255) ggCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGtt < 1:284830/140‑1 (MQ=255) ggCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGtt > 2:284830/1‑140 (MQ=255) tCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGttt < 1:233776/135‑1 (MQ=255) tCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGttt > 2:233776/1‑135 (MQ=255) tGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAgg < 2:1158569/150‑1 (MQ=255) gCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAggg > 1:799694/1‑150 (MQ=255) ccGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGc > 1:1497574/1‑150 (MQ=255) gCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAg < 2:1767099/111‑1 (MQ=255) gCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAg > 1:1767099/1‑111 (MQ=255) cTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGATCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCttt < 2:1400250/150‑1 (MQ=255) ccGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGaa < 1:1562642/150‑1 (MQ=255) gTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagc < 2:1028577/150‑1 (MQ=255) gTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagc < 2:1028576/150‑1 (MQ=255) ttGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca < 2:1497574/150‑1 (MQ=255) ttGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca < 2:799694/150‑1 (MQ=255) ggggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc > 1:357742/1‑150 (MQ=255) ggggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc < 1:1835987/150‑1 (MQ=255) ggggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc < 1:1448903/150‑1 (MQ=255) ggggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagcagc < 1:290586/150‑1 (MQ=255) ggggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCGGAGCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGTGCTTTGAagcagc > 2:1528840/1‑150 (MQ=255) gggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGaa > 1:376169/1‑56 (MQ=255) gggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGaa < 2:376169/56‑1 (MQ=255) gggCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCATTGAAGCAGcc > 1:298661/1‑150 (MQ=255) gCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CCGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGCGGTCAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCaa < 2:273153/150‑1 (MQ=255) gATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAg > 2:1763247/1‑99 (MQ=255) gATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAg < 1:1763247/99‑1 (MQ=255) aTCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTa < 2:43622/125‑1 (MQ=255) aTCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTa > 1:43622/1‑125 (MQ=255) gcagcaTGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAg > 2:1600933/1‑150 (MQ=255) cagcaTGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGa > 2:1569240/1‑150 (MQ=255) cGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAATCAGCCAACACCGCTCCAGAACCCTtgt > 2:317432/1‑150 (MQ=255) cGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTtgt < 1:1600933/150‑1 (MQ=255) gaacAGCTCGATTTCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAag < 2:320455/113‑1 (MQ=255) gaacAGCTCGATTTCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAag > 1:320455/4‑116 (MQ=255) c‑‑cAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca > 2:1095239/1‑116 (MQ=255) c‑‑cAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca < 1:1095239/116‑1 (MQ=255) c‑‑cAGCTCGAAATCGAGCTGTTCGAACAGCAGGCACCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca > 2:1029129/1‑116 (MQ=255) c‑‑cAGCTCGAAATCGAGCTGTTCGAACAGCAGGCACCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAagca < 1:1029129/116‑1 (MQ=255) cAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTc > 1:1665687/1‑150 (MQ=255) gCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGc < 1:384530/150‑1 (MQ=255) cTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGcc > 2:593661/1‑150 (MQ=255) cTCGAAATCGAGCTGTTCGAACAGCAGGCGCAACGCGCTCCCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCCCAGTGTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGcc > 1:646864/1‑150 (MQ=255) gAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAgg > 1:987361/1‑70 (MQ=255) gAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGCCCcg > 1:1548285/1‑150 (MQ=255) | GCATGACGCTGTTCTGCCAGGGGCTTGCCACCCAGCAGAATCTGCCCGGCCGTCGGCTGCATCAGCCCGGCCAGCAGGCGCAACAGGCTGGTCTTGCCGCTGCCGTTGGGGCCACTGATCTGCAGCATGTCGCCGGCGCC‑‑CAGCTCGAAATCGAGCTGTTCGAACAGCAGGCGCCAGTCGCGCTCGCAGGCCAGGCCCGCGGCTTGGAGGTGAAGGGTCACGGTTTCGCCTTATCTTCAGTAGGGCTTTGAAGCAGCCAACACCGCTCCAGAACCCTTGTGTCTCAAGTCGCCCCG > NC_002947/4917256‑4917551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |