| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,936,585 | A→G | 5.2% | L17P (CTC→CCC) | flhA ← | flagellar export pore protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,936,585 | 0 | A | G | 5.2% | 264.1 / 3.5 | 95 | L17P (CTC→CCC) | flhA | flagellar export pore protein |
| Reads supporting (aligned to +/- strand): ref base A (45/45); new base G (3/2); total (48/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-01 | |||||||||||
AAGGCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATG > NC_002947/4936438‑4936734 | aaGGCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCTGGCCGGGc < 1:1835464/150‑1 (MQ=255) aGGCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGcc < 1:1326121/150‑1 (MQ=38) acacAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAgg > 1:223624/1‑150 (MQ=39) acaGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGgtt > 1:1314138/1‑150 (MQ=39) acaGACCAGCAGCACCACGATCGACAGGGCGATGCTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGgtt > 1:747030/1‑150 (MQ=255) ccAGCAGCACCACGATCGACAGGTCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGCTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCCCTAACAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGc < 1:1124186/150‑1 (MQ=11) cagcagCACCACGATAGCCAGGGCGCTGATGACCGAGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCg < 2:593622/150‑1 (MQ=11) agcagcCCCACGATCGACAGGGCGATGGTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCACCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCgg < 2:643455/150‑1 (MQ=255) agcagcACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCgg < 2:223624/150‑1 (MQ=39) gcagcaCCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCggg < 1:444216/150‑1 (MQ=38) cagcaCCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGc > 2:801001/1‑150 (MQ=39) cacGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGGACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCt > 1:383859/1‑150 (MQ=38) cacGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCt > 2:1904373/1‑150 (MQ=39) cacGATCGACAGGGAGATCTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCt < 2:1556741/150‑1 (MQ=255) cGACAGGGCGATGTTGAACGTGAAGAACACGTCGAACAGGAACGGCGGTATCGGCAACATCATCATCGCCAACATCACCAGCAGCAACAGCGGCACCCACAGGTTGCGCTGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTaa < 2:526579/150‑1 (MQ=11) aCAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACt > 2:1752732/1‑150 (MQ=39) ggCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGt > 1:393575/1‑150 (MQ=39) gATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCg > 1:1111804/1‑150 (MQ=38) tGTTGAACGTGACGAACCCGTCGCGAAGGAACGGCGGTATCGGCAACATCATCATGTCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGAt > 2:512998/1‑150 (MQ=11) gTGAAGAACACGTCGAGCCGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCCGCCGCAACCGCAGCACCCCCAGGTCGCCCCGGCCGAGCCCCACCAGGTTGTTGCGGGCGTTGCAGATAAACAGAATGCGATCCACcgcg > 2:599639/1‑150 (MQ=11) gTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCggg > 2:438479/1‑118 (MQ=38) gTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCggg < 1:438479/118‑1 (MQ=38) gTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCggg < 1:1403191/118‑1 (MQ=38) gTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCggg > 2:1403191/1‑118 (MQ=38) gTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCAAGGTTGCTGTGGGTGTCGCTGAGGAACGTAGCGCGATCCACcgcg > 2:1666823/1‑150 (MQ=11) tGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGa < 1:1752732/150‑1 (MQ=35) tGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGa > 2:690826/1‑150 (MQ=34) tGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAAAATCATAATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGa > 2:710703/1‑150 (MQ=21) accaggacacGTCGAGCAGGAACGGCGGTAGCGGAAACCTCATCATTGCAAACATCCCCAGGAGCATCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTCGTCGCGGGAGTTGCTGATTAACTGAGTGCCATCCACCGCGa < 2:932805/144‑1 (MQ=11) gaagaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAg > 1:159682/1‑150 (MQ=35) aagaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGt > 1:478532/1‑150 (MQ=35) agaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTc < 2:393575/150‑1 (MQ=35) cacGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAt < 1:1441378/120‑1 (MQ=38) cacGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACAAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAt > 2:1441378/1‑120 (MQ=37) tCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGAt < 2:1895849/150‑1 (MQ=35) aGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCa > 1:424201/1‑150 (MQ=35) ggAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAAc > 1:591297/1‑150 (MQ=35) tCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑g < 1:237592/150‑1 (MQ=35) gCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑gggg > 1:1805871/1‑150 (MQ=35) tcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGa < 1:472140/134‑1 (MQ=37) tcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGa > 2:472140/1‑134 (MQ=37) tcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCt < 2:1314138/150‑1 (MQ=35) tcatcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGC‑AAACTTTGACGCCCA‑GGGGGCGCCTg > 2:1438083/1‑150 (MQ=25) catcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGa > 2:1064897/1‑86 (MQ=40) catcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGa < 1:1064897/86‑1 (MQ=40) catcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTg > 1:742864/1‑150 (MQ=35) atcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTgg > 1:1196589/1‑150 (MQ=35) tcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCTGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTggg < 1:1666823/150‑1 (MQ=38) tcatTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTggg > 1:1134531/1‑150 (MQ=38) atTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCg > 1:850316/1‑150 (MQ=39) ttGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGt < 1:690826/150‑1 (MQ=38) tGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGCGCCCCCTGGGCGtc < 1:27637/150‑2 (MQ=255) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCACGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGGGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTg < 2:1292542/149‑1 (MQ=255) gCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCACGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTg > 1:1292542/1‑149 (MQ=255) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGccc < 2:1616712/130‑1 (MQ=37) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGccc > 1:1616712/1‑130 (MQ=37) ccAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGc > 1:1231613/1‑150 (MQ=255) cAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGtcaaa < 1:710703/150‑5 (MQ=255) aTCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGc < 2:1231613/150‑1 (MQ=255) cACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCaa > 2:373537/1‑150 (MQ=255) cACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGCGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCaa > 2:1005447/1‑150 (MQ=255) aCCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGGCGCCTg > 1:848370/1‑135 (MQ=255) aCCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGGCGCCTg < 2:848370/135‑1 (MQ=255) ccAGCAGCAACAGCGGCACCCCCGGGTTGCCCCGGCCGAGCCCGTCGAGGTTGTTGCGGGCGTTGCTGGTTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTATGACGCCCA‑GGAGGCGCCGATGCATCGCTTTGCcaga > 2:316833/1‑150 (MQ=11) cagcagCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCaagaa < 2:998187/150‑1 (MQ=255) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAACCTTTGACGCCCA‑ggg < 2:382300/120‑1 (MQ=37) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑ggg > 1:382300/1‑120 (MQ=37) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCtt < 1:512998/150‑1 (MQ=255) agcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGC‑AAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCttt < 1:1438083/150‑1 (MQ=255) gcaACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCttt < 2:747030/150‑1 (MQ=255) caACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTc < 1:656117/150‑1 (MQ=255) aaCAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGGTTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTcc > 2:299904/1‑150 (MQ=255) cAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCaa < 2:850316/150‑1 (MQ=255) aGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAAc < 1:801001/150‑1 (MQ=255) gCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTg < 1:373537/150‑1 (MQ=255) cccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCa < 2:1805871/150‑1 (MQ=255) cccccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCa < 2:1134531/150‑1 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGa > 2:1648550/1‑150 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCACA‑GGCTGCCCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAgc < 1:1899464/150‑2 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGac > 2:343460/1‑150 (MQ=255) cAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg < 2:1940168/144‑1 (MQ=255) cAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTgg > 1:1940168/1‑144 (MQ=255) aGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGacac < 2:591297/150‑1 (MQ=255) ttGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCca < 1:1648550/150‑1 (MQ=255) aacctggCCGGGCTCGGCCGGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGc < 2:509689/103‑1 (MQ=11) aacctggCCGGGCTCGGCCGGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGc > 1:509689/6‑108 (MQ=11) ccccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTACAACTTTGGCAGACACCCacac > 1:1067650/1‑150 (MQ=255) cctggCCGGGCTCGGCCGGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACg > 1:1452490/4‑150 (MQ=255) cctggCCGGGCTCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACg > 1:1447928/4‑150 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac < 2:1301745/149‑1 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCacac > 1:1301745/1‑149 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACg > 1:365732/1‑150 (MQ=255) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGaaaa < 2:742864/150‑1 (MQ=255) cGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa < 1:343460/150‑1 (MQ=255) cGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGa > 1:1782454/1‑150 (MQ=255) aGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATg < 2:383859/150‑1 (MQ=255) | AAGGCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAACGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGCAACAGCGGCACCCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCA‑GGGGGCGCCTGGGCGTGGCTTTGCAAGAAGCTTTCCAACTTTGGCAGACACCCACACGAAAAGATG > NC_002947/4936438‑4936734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |