| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 322,142 | T→C | 12.7% | intergenic (+427/+31) | aguA → / ← PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 322,142 | 0 | T | C | 12.7% | 197.6 / 18.0 | 79 | intergenic (+427/+31) | aguA/PP_0267 | agmatine deiminase/ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base T (35/34); new base C (6/4); total (41/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.98e-01 | |||||||||||
TGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAATGCCGCCCGCA > NC_002947/321994‑322291 | tGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTc < 1:1622377/150‑1 (MQ=255) aTCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAaga < 2:1862666/150‑1 (MQ=255) tCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGAagag < 1:1758054/150‑1 (MQ=255) cAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGCAAAGCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAg‑g < 1:1666231/150‑1 (MQ=255) cAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTa < 1:572505/150‑1 (MQ=255) cAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGAGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTa < 1:1152362/150‑1 (MQ=255) ggACGACCGACCCACGACGTCTGCTTGCCGGGCGATACACCCAAGGCTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACa < 1:866960/150‑1 (MQ=255) gacgacCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGAaga > 1:697633/1‑139 (MQ=255) gacgacCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGAaga < 2:697633/139‑1 (MQ=255) gacgacCGACCCACGACGTCTGCTTACAGGTCGATACTCCCAAGGGCTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAg > 2:512957/1‑150 (MQ=39) gaccgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGAAGAG‑GCa < 2:1806018/140‑1 (MQ=255) gaccgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGAAGAG‑GCa > 1:1806018/1‑140 (MQ=255) ccgaccCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGGTTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAAc < 1:1197107/150‑1 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGTACCTTTACCTGCCTCTTTGCGCGCATTCTTGCGTATAG‑GCTT‑GTACAAACAAATTaaa > 2:1859896/1‑150 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTaaa > 2:1927043/1‑150 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTaaa > 2:1926596/1‑150 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGaa > 2:1580226/1‑127 (MQ=255) ccACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGAGCATGCCCGCGaa < 1:1580226/127‑1 (MQ=255) cTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGt > 1:1328257/1‑150 (MQ=255) agggCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTa > 1:1128997/2‑150 (MQ=255) tACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTg < 2:267085/137‑1 (MQ=255) tACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTg > 1:267085/1‑137 (MQ=255) ccccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTcacca > 2:736411/1‑150 (MQ=255) ccccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTcacca > 2:495800/1‑150 (MQ=255) ccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTaaa < 2:609764/121‑1 (MQ=255) ccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTaaa > 1:609764/1‑121 (MQ=255) ccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCt > 1:1409290/1‑137 (MQ=255) ccAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCt < 2:1409290/137‑1 (MQ=255) cAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTATTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACaa < 2:1736832/150‑1 (MQ=255) ggTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCt > 1:392618/1‑150 (MQ=255) aTCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTAcgcg > 2:1284779/1‑150 (MQ=255) tCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCGG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCgg > 1:1285350/1‑150 (MQ=255) aGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAaga < 2:68632/87‑1 (MQ=255) aGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAaga > 1:68632/1‑87 (MQ=255) aGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGAt < 1:1927043/150‑1 (MQ=255) aGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGAt < 1:1926596/150‑1 (MQ=255) gCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATc > 1:411524/1‑150 (MQ=255) gAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGc < 1:861185/150‑1 (MQ=255) gAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGc > 1:354458/1‑150 (MQ=255) gagaTGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCATAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCt > 1:1877457/1‑150 (MQ=255) aTGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGa > 1:552764/1‑150 (MQ=255) aTGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGa > 1:384079/1‑150 (MQ=255) tGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGAt < 2:392618/150‑1 (MQ=255) gATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGcgccgct < 2:1328257/150‑2 (MQ=255) aTGGCGGTGTGGCACTGATCGGTTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTAccc < 1:1394667/104‑1 (MQ=255) aTGGCGGTGTGGCACTGATCGGTTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTAccc > 2:1394667/1‑104 (MQ=255) aTGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCAc < 1:512957/150‑1 (MQ=255) aTGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCAc < 1:1338997/150‑1 (MQ=255) gCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTcgc > 1:1634170/1‑47 (MQ=255) gCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTcgc < 2:1634170/47‑1 (MQ=255) gCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGa < 2:1283479/114‑1 (MQ=255) gCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGa > 1:1283479/1‑114 (MQ=255) gCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAg > 2:440478/1‑150 (MQ=255) aCTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCACTGTCTGCGCCGCACTGGTCGCCGAGCt > 1:1800/1‑150 (MQ=255) gATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGtagtag < 1:1284779/150‑1 (MQ=255) aTTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAgg < 2:384079/150‑1 (MQ=255) aTTGCACCTGTACCTGCCTCTACGAGGGCATGCTCGCGCGGAGCGAAGCGGTCATG‑‑AGTTAAAAGCAGAAACTGTATCTACCCGTCACCACAAGGCTACGCGGATCGCCCCCATGGATCTGCGCCGCACTGGTTGCTGAGCTGTAGTAgg < 2:1877457/150‑1 (MQ=255) cACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCtt < 1:1766464/150‑1 (MQ=255) aaCCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCtt < 1:1859896/149‑1 (MQ=255) ccTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCAc > 2:1272239/1‑123 (MQ=255) ccTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCAc < 1:1272239/123‑1 (MQ=255) cTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGt < 1:1881262/144‑1 (MQ=255) cTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGt > 2:1881262/1‑144 (MQ=255) cTGTACCTGCCTCTTCGCGAGCATGCCCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTc > 1:146098/1‑150 (MQ=255) cTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgc < 1:1141300/109‑1 (MQ=255) cTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgc > 2:1141300/1‑109 (MQ=255) cTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGGAGCTACCCGGCGCCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCGATAGTGGGTCTTGTCAGCGAt > 2:595443/1‑150 (MQ=255) cTGCCTCTTCGCGAGCATGCCCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAAt > 1:1224200/1‑150 (MQ=255) tGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATg < 2:411524/150‑1 (MQ=255) tGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATg > 1:1385464/1‑150 (MQ=255) ccTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGtt > 1:590963/1‑150 (MQ=255) ctctTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTg > 2:1353438/1‑150 (MQ=255) tctTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgc < 2:1764601/104‑1 (MQ=255) tctTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTgc > 1:1764601/1‑104 (MQ=255) tctTCGCGAGCATGCCCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCAGTCACCACAAGCAGCCACCGATCGGCCACCTGGATCTGCGCCGCACTAGTCGTGGAGCTGTAGTAGGTCTTGTGAGCAATGTTGc > 1:1304173/1‑150 (MQ=37) ttCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTc > 1:1143496/1‑150 (MQ=255) cgcgGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCAGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCaa < 2:552764/150‑1 (MQ=255) gcgGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAAt < 2:354458/150‑1 (MQ=255) cTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATACGAAACTGTAAACGGTCAAGACGAGAAGGCTACGCGAAACGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCGTGTCAGCAATGTTGCTCAATGccgcccgc > 1:1305309/1‑150 (MQ=255) tCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAATGCCGCCCGca > 2:1726047/1‑150 (MQ=255) | TGGAAGCATCAGGGTCAGGACGACCGACCCACGACGTCTGCTTGCCGGGCGATACCCCCAAGGGTTGATCAGCGAAGCAGAGATGCAGGCGCTGATGGCGGTGTGGCACTGATCGATTGCACCTGTACCTGCCTCTTCGCGGGCATGCTCGCGAAGAG‑GCAG‑GTACAGGCAACTTAAAATCAGAAACTGTAGCTACCCGTCACCACAAGGCTACGCGGATCGCCCACCTGGATCTGCGCCGCACTGGTCGCCGAGCTGTAGTAGGTCTTGTCAGCAATGTTGCTCAATGCCGCCCGCA > NC_002947/321994‑322291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |