| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,079,174 | T→A | 7.7% | intergenic (‑371/+26) | mgtE ← / ← PP_t56 | magnesium transporter/tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,079,174 | 0 | T | A | 7.7% | 282.4 / 13.2 | 93 | intergenic (‑371/+26) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base T (38/47); new base A (3/4); total (42/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.89e-01 | |||||||||||
CTATCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCT > NC_002947/5079028‑5079323 | cTATCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTAtt < 1:470470/150‑1 (MQ=255) tCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAg > 2:630614/1‑150 (MQ=255) tCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAg > 2:106428/1‑150 (MQ=255) tCAGTGCGACGATTGTTGTGGATGGGAAAGAACATTTGATTTTTGAGGACGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAg < 2:151811/150‑1 (MQ=255) cAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGc < 2:141158/150‑1 (MQ=255) gTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCgg > 1:495806/1‑150 (MQ=255) tGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCggg < 1:1461697/150‑1 (MQ=255) tGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCAATAGAGCggg < 1:450845/150‑1 (MQ=255) tGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCAATAGAGCggg < 2:1293026/150‑1 (MQ=255) gacgaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCtt > 1:525729/1‑150 (MQ=255) gaTTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCttttt > 2:699679/1‑150 (MQ=255) ttgttgTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCAATAGAGCGGGCTTTTTgt < 2:1428981/150‑2 (MQ=255) tgtgGATGGGAAAGCACATTTGATTTTTGACGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATg‑gg < 1:1459337/150‑1 (MQ=255) tgGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGt > 1:1496003/1‑150 (MQ=255) gATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTAt > 1:669731/1‑150 (MQ=255) gATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTAt > 2:693047/1‑150 (MQ=255) gggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGc > 1:1377657/1‑150 (MQ=255) gggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCACGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGc > 2:1006903/1‑150 (MQ=255) ggAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCg > 1:1132519/1‑150 (MQ=255) aaaGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGa < 1:1918303/150‑1 (MQ=255) tttGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTa > 2:565486/1‑111 (MQ=255) tttGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTa < 1:565486/111‑1 (MQ=255) tttGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTcagcag > 2:1342264/1‑150 (MQ=255) tGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGa < 2:1496003/150‑1 (MQ=255) aTTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGAtt < 2:354101/150‑1 (MQ=255) tttgtGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACCGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTc < 2:341569/150‑1 (MQ=255) ttttGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCg > 2:813671/1‑150 (MQ=255) ttttGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCg > 2:1770314/1‑150 (MQ=255) tGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAAc < 2:305430/150‑1 (MQ=255) tGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAAc < 2:1389683/150‑1 (MQ=255) gCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGc < 1:106428/150‑1 (MQ=255) cGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGTTGTAGTTAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGa < 2:1441667/150‑1 (MQ=255) cGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑AGGTATGGCGGACTCAGCAGGATTCGAACCTGCGa < 2:566213/150‑1 (MQ=255) gCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGAc < 2:1524997/150‑1 (MQ=255) gCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGt < 2:669731/150‑1 (MQ=255) tCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGc < 2:468254/91‑1 (MQ=255) tCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGc > 1:468254/1‑91 (MQ=255) tCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTc > 1:393756/1‑150 (MQ=255) cAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGt > 2:1015522/1‑150 (MQ=255) cTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTatcc > 2:1715684/1‑147 (MQ=255) tACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGNANTNATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTTAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCg > 1:1275173/1‑150 (MQ=255) tACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGcaa < 2:12801/150‑3 (MQ=255) acacCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑a < 2:525729/150‑1 (MQ=255) cGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTAc > 1:1281709/1‑150 (MQ=255) gCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTAct < 2:1377657/150‑1 (MQ=255) cAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGTGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTActc > 1:879023/1‑150 (MQ=255) cATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTATCCG‑AGTACTCTATc < 1:1715684/150‑1 (MQ=255) tACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAg > 2:1541250/1‑150 (MQ=255) aCAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATg‑g < 2:347425/83‑1 (MQ=255) aCAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATg‑g > 1:347425/1‑83 (MQ=255) agaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAg < 1:1568117/147‑1 (MQ=255) agaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAg > 2:1568117/1‑147 (MQ=255) agaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTg < 1:1276160/150‑1 (MQ=255) gaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGa < 2:1132519/150‑1 (MQ=255) gaagaGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGa < 1:1342264/150‑1 (MQ=255) aagaGCGGAGATCGAAAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAg < 2:1114810/150‑1 (MQ=255) agCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGAAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTa < 1:630614/150‑1 (MQ=255) gTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGa < 2:495806/150‑1 (MQ=255) gTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGa < 1:699679/150‑1 (MQ=255) aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGTGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGa < 2:879023/150‑1 (MQ=255) aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTActc > 1:814570/1‑124 (MQ=255) aCAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTActc < 2:814570/124‑1 (MQ=255) aGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATg < 1:1770314/150‑1 (MQ=255) gCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGt > 1:1702057/1‑150 (MQ=255) cTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTa > 1:894424/1‑150 (MQ=255) tCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTg < 1:752757/90‑1 (MQ=255) tCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTg > 2:752757/1‑90 (MQ=255) tCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAg > 2:1006725/1‑150 (MQ=255) aaGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGtt > 1:1448054/1‑150 (MQ=255) aaTTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTTATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTa < 1:1181807/150‑1 (MQ=255) aTTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGGTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAg > 1:251487/1‑150 (MQ=255) aTTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCa > 1:1375542/1‑150 (MQ=255) aTTGGCGCACAAACAAAAAGCCCGCAACGGCGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCGCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATTAGTCCGTGATGGTAGTTTTAGACCa > 1:543703/1‑150 (MQ=21) ggCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCACGt < 1:1937580/150‑1 (MQ=255) gcACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTAc < 2:1281709/150‑1 (MQ=255) cccatcaaaAAGCCCGCTCAATAGCGAGGACTCTTT‑ATGCGGGTATTTCTGACTCATCAGGATTCGAAGCTGCGACCG‑GCGTTCTGTCGCCGTAGTAGTCTATCCAGCTGAGCTATGAGTCCGTGATGGTCGTTTTAGATCAGGTTACCa > 1:1893371/6‑150 (MQ=12) acaaacaaAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCa > 1:1632976/1‑150 (MQ=255) caaacaaaAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCAc < 1:1837887/150‑1 (MQ=255) aaacaaaAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGCGATGGTAGGTTTTGACCCGGTTAccccc > 2:88232/1‑147 (MQ=21) aacaaaAAGTCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGAACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTg < 1:1541250/150‑1 (MQ=255) caaaAAGCCCGCTCAATAGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGc > 2:1526305/1‑150 (MQ=255) aaaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAg < 2:1502627/137‑1 (MQ=255) aaaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAg > 1:1502627/1‑137 (MQ=255) aaaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGc > 2:1782212/1‑149 (MQ=255) aaaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGc < 1:1782212/149‑1 (MQ=255) aaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTa > 2:1783669/1‑130 (MQ=255) aaaaGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTa < 1:1783669/130‑1 (MQ=255) aaGCCCGCTCAATAGAGCGGGCTTTTTGTTG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGa > 2:557592/1‑109 (MQ=17) aaGCCCGCTCAATAGAGCGGGCTTTTTGTTG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGa < 1:557592/109‑1 (MQ=17) aGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACt < 2:251487/150‑1 (MQ=255) cGCTCTATTTACCGTGTTTTTTTATG‑TTTTATTTCGGACTCAGCAGGATTTGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTATTCTATCCCGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGTCCAGGTTACCACTGGCTTACTGaaa < 1:405056/150‑1 (MQ=17) cGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGaaa < 2:1375542/150‑1 (MQ=255) gCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAAt < 2:393756/150‑1 (MQ=255) tATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCt > 1:1228177/1‑150 (MQ=255) | CTATCAGTGCGACGATTGTTGTGGATGGGAAAGCACATTTGATTTTTGAGGCCGCTCAGCGGCTCCAAACTACACCGCAATCATTACAGAAGAGCGTAGATCGACAGGCTCAAGAATTCATTGGCGCACAAACAAAAAGCCCGCTCTATTGAGCGGGCTTTTTGATG‑GGGTATGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCG‑AGTACTCTATCCAGCTGAGCTATGAGTCCGTGATGGTAGTTTTAGACCAGGTTACCACTGGCTTACTGAAATGGCT > NC_002947/5079028‑5079323 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |