| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,212,552 | T→C | 6.5% | intergenic (+68/+26) | PP_4593 → / ← PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,212,552 | 0 | T | C | 6.5% | 286.1 / 4.9 | 101 | intergenic (+68/+26) | PP_4593/PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
| Reads supporting (aligned to +/- strand): ref base T (45/47); new base C (5/2); total (52/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.49e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTGGG > NC_002947/5212403‑5212701 | cgaAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGt < 2:1745617/150‑1 (MQ=255) gCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑c < 2:1937591/150‑1 (MQ=255) gCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACAGCCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑c > 1:610365/1‑150 (MQ=255) cGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑ccc > 2:1128089/1‑150 (MQ=255) cGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑ccc > 2:81615/1‑150 (MQ=255) aaCCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑c > 2:1337641/1‑144 (MQ=255) aaCCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑c < 1:1337641/144‑1 (MQ=255) gCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAgg < 1:467151/150‑1 (MQ=255) ccTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAggg < 2:123543/150‑1 (MQ=255) cTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGc < 1:1300005/150‑1 (MQ=255) gcAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGc > 1:958719/1‑150 (MQ=255) cAAAGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCg < 2:370016/150‑1 (MQ=255) aaGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCgg > 2:303441/1‑150 (MQ=255) gAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGccc > 2:683517/1‑150 (MQ=255) gAAAAGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGccc > 1:279817/1‑150 (MQ=255) tGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTcacaca > 2:1587234/1‑150 (MQ=255) tGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTcacaca < 1:1128089/150‑1 (MQ=255) gCTGATCAAGGACAAGATCGAACGGATCATGCATCCGCCCAAATCCTGACAGGCATATATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGGTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAg > 2:201179/1‑150 (MQ=255) tGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCg < 2:87045/150‑1 (MQ=255) tCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑ccc < 1:24788/118‑1 (MQ=255) tCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑ccc > 2:24788/1‑118 (MQ=255) ggACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGT‑GTAGGAGCGGGCTTG‑CCcgc < 1:169801/116‑1 (MQ=21) ggACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGT‑GTAGGAGCGGGCTTG‑CCcgc < 1:170140/116‑1 (MQ=21) ggACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGT‑GTAGGAGCGGGCTTG‑CCcgc > 2:170140/1‑116 (MQ=21) ggACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑GACGGTGTAGGAGCGGGCTTG‑CCcgc > 2:169801/1‑116 (MQ=21) gACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgcgc < 2:769233/150‑1 (MQ=255) gACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCCTTTCGCGGGTAAACCCGCTCCTAC‑GACGGTGTAGGAGCGGGCTTG‑CCCGCGAAGAGGccggtg > 1:1663152/1‑124 (MQ=14) aaGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCttt > 2:378980/1‑150 (MQ=255) aaGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCttt < 1:1381801/150‑1 (MQ=255) tCGAACGGATCATTCATCCGCCCAAATACTGACAGGCATCTATTGAATCCACCGGACTCTTCGCGGGAAAGCCCGCTCCTAC‑ACCGTCGTAGAAGCGGGCTTA‑CCCGCGAAAGGGCCTGCAGCCCTCACACAGCGACCACCGCTTTCAAc > 2:841396/1‑150 (MQ=255) gAACGGATCATTCATCCGCCCAAATCCTGACCGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGc < 2:610365/150‑1 (MQ=255) cGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTca < 1:807239/123‑1 (MQ=255) cGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTca > 2:807239/1‑123 (MQ=255) ggATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc < 2:1161614/131‑1 (MQ=255) ggATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc > 1:1161614/1‑131 (MQ=255) aTCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATc > 1:705535/1‑150 (MQ=255) aTCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATc < 1:1390019/150‑1 (MQ=255) attcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg < 2:1573131/150‑1 (MQ=255) attcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg < 1:1659359/150‑1 (MQ=255) tCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCt > 2:1227948/1‑150 (MQ=255) tCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCt > 2:1023409/1‑150 (MQ=255) cGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGc < 1:606444/98‑1 (MQ=255) cGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGc > 2:606444/1‑98 (MQ=255) cccAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGc < 2:1629821/114‑1 (MQ=255) cccAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTTGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGc > 1:1629821/1‑114 (MQ=255) aaaTCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAg < 1:1514318/150‑1 (MQ=255) aTCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAg < 2:1604535/148‑1 (MQ=255) aTCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAg > 1:1604535/1‑148 (MQ=255) tGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACg < 1:1167247/150‑1 (MQ=255) aGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCt > 2:3131/1‑133 (MQ=255) aGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCt < 1:3131/133‑1 (MQ=255) aGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTaa < 2:116358/150‑1 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATc > 1:1488002/1‑150 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATc > 2:1132638/1‑150 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATc > 1:739756/1‑150 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGACAAGGCCGCTCCTAC‑ACCGTCGTAGGATCGGGGTTA‑CGCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGTCCAGGTCAGGGTAATc > 2:1647258/1‑150 (MQ=255) cATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATcc > 1:1655895/1‑150 (MQ=255) aTCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑ccc > 1:218568/1‑69 (MQ=255) aTCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCt < 2:1024865/150‑1 (MQ=255) tATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGa < 1:81615/150‑1 (MQ=255) aTTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGAt > 2:287172/1‑150 (MQ=255) aTTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGAt < 1:378980/150‑1 (MQ=255) ttGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACTCTCTTAGCGGGTCGTACAGCGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATc < 2:958719/150‑1 (MQ=25) aaTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCt > 1:384398/1‑150 (MQ=255) aaTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCAGACTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCt > 2:957628/1‑150 (MQ=255) tCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAc < 1:1023409/150‑1 (MQ=255) ccACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAcc < 2:1655895/150‑1 (MQ=255) cACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCg > 2:640015/1‑150 (MQ=255) ctctTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCg < 1:858739/150‑1 (MQ=255) tctTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCTGGTTTA‑CCCGCGAAAGGGCCTGCTGCCCTCACACAGCGACCATCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgc > 2:882179/1‑150 (MQ=255) ttCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTc < 2:458933/108‑1 (MQ=255) ttCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTc > 1:458933/1‑108 (MQ=255) ttCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgcag > 1:451515/1‑150 (MQ=255) cgGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGCTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAgg < 1:1673481/150‑1 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc > 2:1706004/1‑73 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc < 1:1706004/73‑1 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATcc > 2:1263535/1‑95 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATcc < 1:1263535/95‑1 (MQ=255) aGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCg < 2:279817/150‑1 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg < 2:102496/91‑1 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAg > 1:102496/1‑91 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAAcc < 1:452370/135‑1 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAAcc > 2:452370/1‑135 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGc > 1:1216102/1‑150 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGc < 2:705535/150‑1 (MQ=255) tCCTAC‑ACCGTCGTAGGGGCGGGTTTACCCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATc < 1:287263/150‑1 (MQ=255) ccTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATccc < 1:900952/150‑1 (MQ=255) ac‑acCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCAt < 1:1132638/150‑1 (MQ=255) gtcgtAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGa < 2:1324976/105‑1 (MQ=255) gtcgtAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGa > 1:1324976/1‑105 (MQ=255) tAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGCCAACCGCAGCGGGTTCTCGCTGATCCCCATCACCCCttt > 1:474144/1‑150 (MQ=255) gCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCa > 2:786016/1‑83 (MQ=255) gCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCa < 1:786016/83‑1 (MQ=255) gCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGct > 2:1694272/1‑150 (MQ=255) gggTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgcagc < 2:802431/114‑1 (MQ=255) gggTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgcagc > 1:802431/1‑114 (MQ=255) gggTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGctct > 1:704096/1‑150 (MQ=255) gTTTA‑CCCGCGAAAGGGCCTGCGGACCTGACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTgg > 1:262492/1‑150 (MQ=255) tttA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCTGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTggg < 1:1587234/150‑1 (MQ=255) tttA‑CCCGCGAAAGGGCCTGCGGCCCTCAAACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTggg < 2:739756/150‑1 (MQ=255) | CGAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTA‑CCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTGGG > NC_002947/5212403‑5212701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |