Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,344,515 C→G 7.8% intergenic (+42/‑136) pgi‑II → / → acsA‑II glucose 6‑phosphate isomerase/acetyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,344,5150CG 7.8% 387.9 / 19.2 125intergenic (+42/‑136)pgi‑II/acsA‑IIglucose 6‑phosphate isomerase/acetyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base C (57/58);  new base G (5/5);  total (62/63)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01

Only 100 of 128 total aligned reads displayed.

TGGGCAAGGGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGTTCGATATCCG  >  NC_002947/5344367‑5344664
                                                                                                                                                        |                                                                                                                                                     
tgggcaaggGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCa                                                                                                                                                      <  1:369255/150‑1 (MQ=255)
 gggcaaggGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTAcccg                                                                                                                                                     >  2:413997/1‑148 (MQ=255)
 gggcaaggGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAg                                                                                                                                                     <  1:720164/150‑1 (MQ=255)
  ggcaaggGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAgg                                                                                                                                                    <  1:830718/150‑1 (MQ=255)
     aaggGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCaa                                                                                                                                                 >  2:1311451/1‑150 (MQ=255)
        ggCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAAcgc                                                                                                                                              <  1:102557/150‑1 (MQ=255)
        ggCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAAcgc                                                                                                                                              >  1:270691/1‑150 (MQ=255)
         gCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAgg                                                                                                                                                    >  2:838219/1‑143 (MQ=255)
            tttACCAGCGCTTTGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCCGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACCAGCT‑‑CCTACGAGGTAACGCGt                                                                                                                                            <  1:439915/150‑1 (MQ=25)
                       ttGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAg                                                                                                                               >  2:937897/1‑150 (MQ=255)
                           tCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCggg                                                                                                                           <  1:1792384/150‑1 (MQ=255)
                            cGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAggcgggt                                                                                                                            <  2:1601266/150‑6 (MQ=25)
                            cGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAggcgggt                                                                                                                            >  1:1601266/1‑145 (MQ=25)
                               tAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAACCC‑‑CG‑‑CCTACCAGGCAACGGGTTACCTCGTAGTAGCTGGTTTa                                                                                                                       <  2:1529510/150‑1 (MQ=255)
                                    tGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAG‑‑GCGGGTTTAc                                                                                                                      <  1:1143868/146‑1 (MQ=21)
                                         gACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAaga                                                                                                             <  1:683168/150‑1 (MQ=255)
                                           cAGCGCCGAAGACTGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGGGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAgg                                                                                                           <  1:1688693/150‑1 (MQ=255)
                                             gcgcCGAAGACGGTTCCACCCAAGGCCTGAGCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTATTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAACAcgcc                                                                                                         >  1:521924/1‑150 (MQ=255)
                                                  gAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGccc                                                                                                    >  2:1094611/1‑150 (MQ=255)
                                                       cGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGtt                                                                                               <  2:1156155/150‑1 (MQ=255)
                                                         gTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAgg                                                                                                 >  1:1214724/1‑146 (MQ=255)
                                                         gTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAgg                                                                                                 <  2:1214724/146‑1 (MQ=255)
                                                          ttCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGaa                                                                                            <  2:1607069/150‑1 (MQ=255)
                                                             cACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCTGCACCTCGTAGAAGCGGGATTACCCCCGAAGAGACCGGCCCAGGTTGAacac                                                                                         >  2:1101417/1‑150 (MQ=39)
                                                              aCCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTACACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAacaac                                                                                        >  1:167176/1‑148 (MQ=255)
                                                              aCCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAggcgggt                                                                                                                            >  1:670648/1‑111 (MQ=17)
                                                              aCCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAggcgggt                                                                                                                            <  2:670648/116‑6 (MQ=17)
                                                              aCCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCGCTTGGCGGCTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAAAGGCCGGCCCAGGTTGAACAcc                                                                                        >  1:1068770/1‑150 (MQ=255)
                                                                ccAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGaa                                                                                            <  2:1090841/144‑1 (MQ=255)
                                                                ccAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGaa                                                                                            >  1:1090841/1‑144 (MQ=255)
                                                                     gCCTGATCAACCACTTCTGCGGCCGTCACCGCGGTTGATCCAAGCTAGTGCCGGTCGCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCCCCTAGGAGCGGGGTTACCCGCGACGACGCCGGCCCAGGGAGAGCACCGCTtccg                                                                                 >  2:272255/1‑149 (MQ=255)
                                                                     cccTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCa                                                                                 <  1:586899/149‑1 (MQ=255)
                                                                      ccTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGaa                                                                                                               >  2:987406/1‑119 (MQ=255)
                                                                        tGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCgg                                                                                                                            <  1:1880340/104‑1 (MQ=255)
                                                                        tGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCgg                                                                                                                            >  2:1880340/1‑104 (MQ=255)
                                                                        tGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTc                                                                                    <  1:689055/144‑1 (MQ=255)
                                                                        tGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTc                                                                                    >  2:689055/1‑144 (MQ=255)
                                                                           tCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTaca                                                                           >  1:1545314/1‑150 (MQ=255)
                                                                             aaCTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGtt                                                                                               >  1:1369430/1‑128 (MQ=255)
                                                                             aaCTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGtt                                                                                               <  2:1369430/128‑1 (MQ=255)
                                                                               ctactTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAggc                                                                                                          >  2:619963/1‑115 (MQ=255)
                                                                               ctactTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAggc                                                                                                          <  1:619963/115‑1 (MQ=255)
                                                                               ctactTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGt                                                                       <  1:1311451/150‑1 (MQ=255)
                                                                               ctactTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCAATTTGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGt                                                                       >  1:839214/1‑150 (MQ=255)
                                                                               atactTCCGCGGCCGTCACCGTGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGGAAACC‑‑CG‑‑CCTACCCGGCAACGCGTTACGTCGTAGGAGGGGGGTGACACGCGAAGAGGCCGGGCGAGGTTGAAAACAGCGCCCCGCGACACTGt                                                                       >  2:181403/2‑150 (MQ=255)
                                                                                tactTCGGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTc                                                                      >  2:485204/1‑150 (MQ=255)
                                                                                tactTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACGCTGTc                                                                      <  2:1581733/150‑1 (MQ=255)
                                                                                  ctTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCtt                                                                    >  1:126497/1‑150 (MQ=255)
                                                                                     ccGCGGCCGTCACCGTGGTTGATCCGAGCTTGTGTCGGCCTCCTCGCGGGCAAACC‑‑CG‑‑TCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATc                                                                 <  1:181403/150‑1 (MQ=39)
                                                                                     ccGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATc                                                                 <  1:1720526/150‑1 (MQ=255)
                                                                                         ggCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAAt                                                             >  2:938477/1‑150 (MQ=255)
                                                                                            cGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTGCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGc                                                          <  1:1904980/150‑1 (MQ=255)
                                                                                             gTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGcc                                                         >  1:1226913/1‑150 (MQ=255)
                                                                                                aCCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGtt                                                      >  2:254094/1‑150 (MQ=255)
                                                                                                aCCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTAAACCcgctc                                                                                                                <  1:742897/92‑3 (MQ=38)
                                                                                                  cgcgGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACt                                                                         <  1:1728942/129‑1 (MQ=255)
                                                                                                  cgcgGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACt                                                                         >  2:1728942/1‑129 (MQ=255)
                                                                                                   gcgGTTGATCCGAGCTTGTGCCGGCCTCTTCGCTGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCa                                                   <  1:272255/150‑1 (MQ=255)
                                                                                                   gcgGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCa                                                   <  1:937897/150‑1 (MQ=255)
                                                                                                      gTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTc                                                >  1:483197/1‑150 (MQ=255)
                                                                                                       ttGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTcc                                               <  2:126497/150‑1 (MQ=255)
                                                                                                         gATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCAt                                             <  2:413360/150‑1 (MQ=255)
                                                                                                          aTCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATc                                            <  1:254094/150‑1 (MQ=255)
                                                                                                          aTCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATc                                            >  1:1519872/1‑150 (MQ=255)
                                                                                                           tCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCg                                           >  2:523410/1‑150 (MQ=255)
                                                                                                             cGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGcc                                         >  2:1497441/1‑150 (MQ=255)
                                                                                                              gAGGTTGGGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGccc                                        <  2:639288/150‑1 (MQ=255)
                                                                                                              gAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGccc                                        <  1:220354/150‑1 (MQ=255)
                                                                                                               aGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGcccc                                       <  1:1094611/150‑1 (MQ=255)
                                                                                                                     tgCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCACTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACaa                                 <  2:270691/150‑1 (MQ=255)
                                                                                                                       ccGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAaga                               <  1:1785099/150‑1 (MQ=255)
                                                                                                                        cGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAagag                              <  1:1662300/150‑1 (MQ=255)
                                                                                                                         ggCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGc                             <  2:1519872/150‑1 (MQ=255)
                                                                                                                         ggCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGc                             >  2:1151863/1‑150 (MQ=255)
                                                                                                                           ccTCTTCGCGGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAG‑‑GCGGGTTTACCCGCGAAGAGGCCGGCACAAGTTGAACACCGCTCCCAGCCACACTGTCTTATCGAATAGCCGTCGCAGTCCATCGCCCCTTACAAGAGCAg                           >  1:539426/1‑150 (MQ=17)
                                                                                                                           ccTCTTCGCGGGTAAACC‑‑CG‑‑CTTACCAGGCACACCGTTACCTCGTACGAGTGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTAGCGAATAGCCGTTGCCGTCCATCGCCCCTTACAAGAGCac                           <  2:167176/150‑2 (MQ=255)
                                                                                                                           ccTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAg                           <  1:334978/150‑1 (MQ=255)
                                                                                                                           ccTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAg                           <  1:523410/150‑1 (MQ=255)
                                                                                                                            ctctTCGCGGGTAATCT‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAgg                          <  2:839214/150‑1 (MQ=255)
                                                                                                                               ttCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCt                                      <  2:254587/135‑1 (MQ=255)
                                                                                                                               ttCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCt                                      >  1:254587/1‑135 (MQ=255)
                                                                                                                                  gcgGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAG‑‑GCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGt                                                       <  2:1557173/115‑1 (MQ=14)
                                                                                                                                  gcgGGTAAACC‑‑CGCTCCTACGAGGTAACGCGTTGCCTGGTAG‑‑GCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGACGt                                                       >  1:1557173/1‑115 (MQ=14)
                                                                                                                                  gcgGGTAAACC‑‑CG‑‑CCTACCAGGGAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGaccacc                    <  2:1301076/150‑1 (MQ=255)
                                                                                                                                  gcgGGTAAACC‑‑CA‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGaccacc                    >  1:1301076/1‑150 (MQ=255)
                                                                                                                                     ggTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACaa                                 >  2:795685/1‑134 (MQ=255)
                                                                                                                                     ggTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACaa                                 <  1:795685/134‑1 (MQ=255)
                                                                                                                                      gTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGaa                                                                                            <  1:496504/74‑1 (MQ=255)
                                                                                                                                      gTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGaa                                                                                            >  2:496504/1‑74 (MQ=255)
                                                                                                                                      gTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGcc                <  2:1719242/150‑1 (MQ=255)
                                                                                                                                      gTAAACC‑‑CG‑‑CCTAACAGGCAACGACTTCCTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGcc                <  1:492280/150‑1 (MQ=39)
                                                                                                                                          aCC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGtt                                                                                               <  1:203706/67‑1 (MQ=255)
                                                                                                                                          aCC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGtt                                                                                               >  2:203706/1‑67 (MQ=255)
                                                                                                                                           cc‑‑cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGtt           >  2:1819684/1‑150 (MQ=255)
                                                                                                                                           cc‑‑cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGtt           >  2:732018/1‑150 (MQ=255)
                                                                                                                                            c‑‑cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGTTc          >  1:90479/1‑150 (MQ=255)
                                                                                                                                               cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCa                                                   >  1:849739/1‑108 (MQ=255)
                                                                                                                                               cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCa                                                   <  2:849739/108‑1 (MQ=255)
                                                                                                                                               cG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGTTCg         <  2:1068770/150‑1 (MQ=255)
                                                                                                                                                       ccAGTCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGTTCGATATcc   <  1:413997/150‑1 (MQ=255)
                                                                                                                                                        |                                                                                                                                                     
TGGGCAAGGGCGTTTACCAGCGCTTGGTCGGTAGCCTGGAAGACAGCGCCGAAGACGGTTCCACCCAAGGCCTGATCAACTACTTCCGCGGCCGTCACCGCGGTTGATCCGAGCTTGTGCCGGCCTCTTCGCGGGTAAACC‑‑CG‑‑CCTACCAGGCAACGCGTTACCTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGTTGAACACCGCTCCCAGCTACACTGTCTTATCGAATAGCCGTTGCAGTCCATCGCCCCTTACAAGAGCAGGACCACCCGCCATGTTCGATATCCG  >  NC_002947/5344367‑5344664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: