| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,566,464 | T→A | 6.1% | Q358L (CAG→CTG) | mutL ← | DNA mismatch repair protein MutL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,566,464 | 0 | T | A | 6.1% | 312.9 / 9.6 | 99 | Q358L (CAG→CTG) | mutL | DNA mismatch repair protein MutL |
| Reads supporting (aligned to +/- strand): ref base T (45/48); new base A (3/3); total (48/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.63e-01 | |||||||||||
Only 100 of 104 total aligned reads displayed.
CAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGG > NC_002947/5566319‑5566611 | cAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCctgctg < 1:1449968/150‑1 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGATGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCGTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTgg < 1:1424096/150‑1 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTgg < 1:1923719/150‑1 (MQ=255) gCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCAGCAGGCCGGTga < 2:1769561/150‑2 (MQ=255) ggACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCct > 1:1495741/1‑133 (MQ=255) ggACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCct < 2:1495741/133‑1 (MQ=255) ggACGGGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGACAAAATTCCGCA‑AGCAGCCGCGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGa > 2:1506406/1‑150 (MQ=255) gACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGc > 1:1262679/1‑147 (MQ=255) gACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGc < 2:1262679/147‑1 (MQ=255) gACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGaa > 1:1029978/1‑150 (MQ=255) ggTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTc < 2:1480493/150‑1 (MQ=255) gtgtATTGATACTGGCAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCa < 2:1350571/150‑1 (MQ=255) tgtATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAg < 1:1057217/150‑1 (MQ=255) ttGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTAc > 2:1793822/1‑150 (MQ=255) tGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACg < 2:1262350/150‑1 (MQ=255) aTACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGgc > 1:465384/1‑150 (MQ=255) tACTGGTAACTGGCGCCGCTGCCGCCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCGAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGgca < 2:128574/150‑1 (MQ=255) tGGTAACCAGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGgcagca < 2:1832847/150‑1 (MQ=255) ggTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGcagcag > 1:1543761/1‑150 (MQ=255) aCCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGc < 1:970362/150‑1 (MQ=255) cGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCgg > 2:86178/1‑150 (MQ=255) gcgcCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGcc < 2:576910/150‑1 (MQ=255) ccgcTGCCACCATTGGAAAACGACTGTTGAGGGGCTCGAGGCTGTTCATGGACCCGGCAGTCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAT‑GTACGTCACCTATTGCGGCCAGc > 2:271785/1‑150 (MQ=255) tGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGt < 2:1178484/150‑1 (MQ=255) ccaccaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTgg < 2:1694957/99‑1 (MQ=255) caccaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCtt > 2:1458751/1‑150 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTg > 1:1330774/1‑144 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTg < 2:1330774/144‑1 (MQ=255) accaTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTc < 1:306053/150‑1 (MQ=255) aTTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCgg > 1:316997/1‑150 (MQ=255) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGa < 1:284984/150‑1 (MQ=255) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACCCACCGGCCAGCAGGCCGGTgagttc < 1:1923123/104‑6 (MQ=38) ttGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACCCACCGGCCAGCAGGCCGGTgagttc > 2:1923123/1‑99 (MQ=38) ggAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGCCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACg < 1:507957/150‑1 (MQ=255) aCTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCgg > 1:1769950/1‑150 (MQ=255) aCTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCgg > 1:1235632/1‑150 (MQ=255) cTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGc < 2:465384/150‑1 (MQ=255) tGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTgggg > 1:550932/1‑90 (MQ=255) tGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTgggg < 2:550932/90‑1 (MQ=255) tGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGcc > 1:1919034/1‑150 (MQ=255) tGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAA‑CAAATCGGAGGACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGcc > 1:1087898/1‑150 (MQ=255) ttGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCaa > 2:696387/1‑150 (MQ=255) ttGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCaa < 2:1235632/150‑1 (MQ=255) gCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGc < 2:1093061/115‑1 (MQ=255) gCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGc > 1:1093061/1‑115 (MQ=255) gCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAgg < 1:696387/150‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGc > 2:1167602/1‑76 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGc < 1:1167602/76‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGt < 1:418239/111‑1 (MQ=255) ggggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGt > 2:418239/1‑111 (MQ=255) ggCTCGAGGCTGTTCAAGCACCGGCGCGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACg < 1:1458751/150‑1 (MQ=255) ggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCaa > 1:7175/1‑144 (MQ=255) ggCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCaa < 2:7175/144‑1 (MQ=255) gCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACgg > 1:754599/1‑150 (MQ=255) gCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACgg < 1:1675223/150‑1 (MQ=255) gCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACgg > 1:1340596/1‑150 (MQ=255) cTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGt < 1:426449/150‑1 (MQ=255) tGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTg > 1:1199634/1‑150 (MQ=255) ttCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGcc < 1:271785/150‑1 (MQ=255) ttCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGcc > 2:668270/1‑150 (MQ=255) gCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACa < 2:316997/150‑1 (MQ=255) cACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAg < 2:1199634/150‑1 (MQ=255) ccGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCATCTCAG‑GTACGGCAGAAGGTGCGGCCAGCTGGTCTTCTGGACGTACATAGGCCAAGGCACGGTGCAAGGTGCCATACAGGa > 1:258951/1‑150 (MQ=255) aGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCAt > 1:1138312/1‑150 (MQ=255) ccAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCa > 1:505942/1‑150 (MQ=255) g‑cgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTggg > 1:1650623/1‑48 (MQ=255) g‑cgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTggg < 2:1650623/48‑1 (MQ=255) g‑cgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGa < 2:946399/97‑1 (MQ=255) g‑cgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGa > 1:946399/1‑97 (MQ=255) cgcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAg < 2:1769950/150‑1 (MQ=255) gcATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAgc > 1:404472/1‑150 (MQ=255) aTTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCtt > 1:218531/1‑88 (MQ=255) aTTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCtt < 2:218531/88‑1 (MQ=255) tttCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGcc > 1:142378/1‑150 (MQ=255) tttCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGcc < 2:754599/150‑1 (MQ=255) ttCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGccc < 1:826874/150‑1 (MQ=255) tCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGACATGCACCGAGCGCCCt > 1:1929049/1‑150 (MQ=255) aCCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTc > 1:383626/1‑150 (MQ=255) aCCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTc > 1:178778/1‑150 (MQ=255) cTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTcgcg < 1:1067809/150‑1 (MQ=255) gggCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGaa < 2:383626/150‑1 (MQ=255) ggCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACTGGCCACCATGCACCGAGCGCCCTTCGCGGAAc < 1:1506406/150‑1 (MQ=255) ggCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAc < 1:668270/150‑1 (MQ=255) gCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAAcc > 1:1217327/1‑150 (MQ=255) ttcgccccACCGGCCAGCAGGCCGGTGAGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGt > 1:1015249/8‑150 (MQ=255) tcgccccACCGGCCAGCAGGCCGGTGAGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTa < 2:1015249/144‑1 (MQ=255) cGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGTTACGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTa > 1:1694679/1‑150 (MQ=255) aaCTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACt < 2:1919034/150‑1 (MQ=255) aCTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCCTACCGGACGTCATGCACCGAGCGCCCTTCGCGGAACCGTACtt < 2:1087898/150‑1 (MQ=255) cACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGc > 1:1386816/1‑102 (MQ=255) cACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGc < 2:1386816/102‑1 (MQ=255) aCCGGCCTGCAGACCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCGGGTGCAGCCAGCTGGTCTTCCGGACGTACATCGGCCACGGCACGCTGCAAGCTGCCATACAGGAAGGCATGCACCGAGCGCCCTGCTCGGAACCGTACTTCATg > 2:118331/1‑150 (MQ=255) cGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACAt < 2:293592/75‑1 (MQ=255) cGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACAt > 1:293592/1‑75 (MQ=255) cGGCCAGCAGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCt > 1:641265/1‑150 (MQ=255) ggCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGGCAGCTGATCTTCCGGACGTAAATCGTCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCtt > 1:236756/1‑150 (MQ=255) ggCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCtt < 2:404472/150‑1 (MQ=255) ccTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCttgg > 1:238295/1‑150 (MQ=255) ctgctgGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAg < 2:69266/106‑1 (MQ=255) ctgctgGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAg > 1:69266/1‑106 (MQ=255) | CAGCGGCTGCGAGGGACGTGGGGTGTATTGATACTGGTAACCGGCGCCGCTGCCACCATTGGAAAACGACTGTTGCGGGGCTCGAGGCTGTTCAAGCACCGGCGAGGCCAGG‑CGCATTTCACCCTGGGGCCCGAACTCACCGGCCTGCTGGCCGGTGGGGCGAACCAGCTCAG‑GTACGGCAGCAGGTGCGGCCAGCTGGTCTTCCGGACGTACATCGGCCAAGGCACGGTGCAAGGTGCCATACAGGAAGTCATGCACCGAGCGCCCTTCGCGGAACCGTACTTCATGCTTGG > NC_002947/5566319‑5566611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |