Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,790,036 C→A 6.0% G379G (GGC→GGA)  ynfM → efflux transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,790,0360CA 6.0% 276.7 / 2.4 88G379G (GGC→GGA) ynfMefflux transporter
Reads supporting (aligned to +/- strand):  ref base C (45/36);  new base A (3/3);  total (48/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGTCCACTGGTGATGGTGATCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCAAAACGGTGT  >  NC_002947/5789887‑5790175
                                                                                                                                                     |                                                                                                                                            
aGTCCACTGGTGATGGTGATCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTTGCTGTACCTGTTCTGCTACTACGCTGGc                                                                                                                                              >  1:974260/1‑150 (MQ=255)
  tCCACTGGTGATGGTGATCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTc                                                                                                                                            >  2:1359968/1‑150 (MQ=255)
        ggtgatggtgatCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGt                                                                                                                                      <  1:944503/150‑1 (MQ=255)
         gtgatggtgatCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTg                                                                                                                                     <  1:737925/150‑1 (MQ=255)
           gatggtgatCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGc                                                                                                                                   <  1:1359968/150‑1 (MQ=255)
                   tCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTAGGTGAGCCGGCCNACGCTAATCGCATTACCTGAGTCCATGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGACTCCAGCGTGGCCGGTAcgg                                                                                                                           >  1:529273/1‑150 (MQ=255)
                           ttGCTCGTGTTCCCTTTGGTCTTCTTTGGTGCGCACTCGGTGGCCTGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGcgggcggg                                                                                                                   <  2:529273/149‑1 (MQ=255)
                           aTGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGcgggcggg                                                                                                                   <  2:1447135/150‑1 (MQ=255)
                                 gtgtTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTcc                                                                                                                                           >  1:1903658/1‑120 (MQ=255)
                                 gtgtTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTcc                                                                                                                                           <  2:1903658/120‑1 (MQ=255)
                                 gtgtTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTc                                                                                                             >  2:1572341/1‑150 (MQ=255)
                                    ttCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTgg                                                                                                          >  1:976940/1‑150 (MQ=255)
                                    ttCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACCACGCTGGAGCCAGCGtagta                                                                                                                                  <  1:13732/126‑5 (MQ=255)
                                    ttCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCGGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACCACGCTGGAGCCAGCGtagta                                                                                                                                  >  2:13732/1‑122 (MQ=255)
                                         cTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCa                                                                                                     >  1:1251543/1‑150 (MQ=255)
                                         cTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCa                                                                                                     >  2:492507/1‑150 (MQ=255)
                                         cTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCa                                                                                                     >  2:1402836/1‑150 (MQ=255)
                                              gCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTggg                                                                                                >  2:234389/1‑150 (MQ=255)
                                               cttcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGGTCCAGCGTGGcc                                                                                                                                  <  1:1068557/115‑1 (MQ=255)
                                               cttcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGcc                                                                                                                                  >  2:1068557/1‑115 (MQ=255)
                                                ttcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTa                                                                                                                              <  2:1670404/118‑1 (MQ=255)
                                                ttcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTa                                                                                                                              >  1:1670404/1‑118 (MQ=255)
                                                ttcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGc                                                                                              >  2:225867/1‑150 (MQ=255)
                                                 tcttTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAATGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCt                                                                                             <  2:1807801/150‑1 (MQ=255)
                                                   tttGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTgg                                                                                           >  2:784072/1‑150 (MQ=255)
                                                       gTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACg                                                                                       >  2:301762/1‑150 (MQ=255)
                                                        tGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTg                                                                                                                                     >  2:447540/1‑103 (MQ=255)
                                                        tGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTg                                                                                                                                     <  1:447540/103‑1 (MQ=255)
                                                               tCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGGGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCggg                                                                              >  1:1558208/1‑150 (MQ=255)
                                                               tCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTg                                                                                            >  2:1013766/1‑137 (MQ=255)
                                                               tCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTg                                                                                            <  1:1013766/137‑1 (MQ=255)
                                                               tCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCggg                                                                              >  1:1748450/1‑150 (MQ=255)
                                                                  gtcgCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTg                                                                           <  1:573630/147‑1 (MQ=255)
                                                                  gTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTg                                                                           <  2:1251543/150‑1 (MQ=255)
                                                                      ccAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCa                                                                       >  2:1289799/1‑150 (MQ=255)
                                                                               ggATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCt                                                              >  2:343589/1‑150 (MQ=255)
                                                                                gATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCtt                                                             <  1:234389/150‑1 (MQ=255)
                                                                                  tCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTgg                                                                   >  1:1132160/1‑142 (MQ=255)
                                                                                  tCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTgg                                                                   <  2:1132160/142‑1 (MQ=255)
                                                                                  tCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGc                                                           >  1:1940441/1‑150 (MQ=255)
                                                                                    ggCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTg                                                         >  2:1750364/1‑150 (MQ=255)
                                                                                    ggCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTg                                                         >  2:1665506/1‑150 (MQ=255)
                                                                                    ggCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTg                                                         <  1:492507/150‑1 (MQ=255)
                                                                                         ccgGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGt                                                    <  2:1504677/150‑1 (MQ=255)
                                                                                          cgGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTg                                                   >  1:9741/1‑150 (MQ=255)
                                                                                            ggCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGc                                                 <  1:1750364/150‑1 (MQ=255)
                                                                                                 tGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACg                                                                                       >  1:962643/1‑108 (MQ=255)
                                                                                                 tGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACg                                                                                       <  2:962643/108‑1 (MQ=255)
                                                                                                 tGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGa                                            >  2:857389/1‑150 (MQ=255)
                                                                                                 tGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGa                                            >  1:485300/1‑150 (MQ=255)
                                                                                                 tGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCCGGGTGTTCTGGCACCAGTGGGGACGAAAAGGTGAT‑GTGCGGGGCGGTGGCAGCTTGCTGGCGGTGGACTTGa                                            >  1:1884845/1‑150 (MQ=255)
                                                                                                  gAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCgggg                                                                                                                  <  2:745408/80‑1 (MQ=255)
                                                                                                  gAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCgggg                                                                                                                  >  1:745408/1‑80 (MQ=255)
                                                                                                   aaGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGAtg                                          <  2:1500302/150‑1 (MQ=255)
                                                                                                     ggCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGAtggt                                        <  1:784072/150‑1 (MQ=255)
                                                                                                       ccAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGAtggttg                                      <  2:485300/150‑3 (MQ=255)
                                                                                                        cAAGGTGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGc                                     >  2:25616/1‑150 (MQ=255)
                                                                                                        cAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGc                                                                             >  1:1110178/1‑110 (MQ=255)
                                                                                                        cAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGc                                                                             <  2:1110178/110‑1 (MQ=255)
                                                                                                             ggCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGc                                >  2:1733970/1‑150 (MQ=255)
                                                                                                              gCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCATCCACGCTGTGGCCTTGATGGTGGCGTTGCa                               >  1:1457942/1‑150 (MQ=255)
                                                                                                               cAGGCGGCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCAc                              <  2:665757/150‑1 (MQ=255)
                                                                                                                  gCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTg                           >  2:1903377/1‑150 (MQ=255)
                                                                                                                       gtcgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGt                                   <  2:980337/137‑1 (MQ=255)
                                                                                                                       gtcgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGt                                   >  1:980337/1‑137 (MQ=255)
                                                                                                                        tcgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAg                     <  1:1139718/150‑1 (MQ=255)
                                                                                                                        tcgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAg                     <  1:1402836/150‑1 (MQ=255)
                                                                                                                        tcgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAg                     >  2:1155855/1‑150 (MQ=255)
                                                                                                                         cgCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGt                    <  2:976940/150‑1 (MQ=255)
                                                                                                                          gCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGtt                   >  1:1563409/1‑150 (MQ=255)
                                                                                                                          gCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGtt                   <  1:1572341/150‑1 (MQ=255)
                                                                                                                           cTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTg                                             <  2:1855793/123‑1 (MQ=255)
                                                                                                                           cTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTg                                             >  1:1855793/1‑123 (MQ=255)
                                                                                                                              tACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCa               <  2:9741/150‑1 (MQ=255)
                                                                                                                              tACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCa               <  1:1665506/150‑1 (MQ=255)
                                                                                                                               aCCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCAc              <  1:1289799/150‑1 (MQ=255)
                                                                                                                                 cTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCAccc            <  1:225867/150‑1 (MQ=255)
                                                                                                                                 cTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGGTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCAccc            >  2:283863/1‑150 (MQ=255)
                                                                                                                                  tGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCa           >  1:1916458/1‑150 (MQ=255)
                                                                                                                                   gTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCaa          >  1:1879850/1‑150 (MQ=255)
                                                                                                                                         cggccacGCTGGAGCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCAc                              <  2:335227/119‑1 (MQ=255)
                                                                                                                                         cggccacGCTGGAGCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCAc                              >  1:335227/6‑124 (MQ=255)
                                                                                                                                          tactacGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGcc                                                <  2:1204461/105‑1 (MQ=255)
                                                                                                                                          tactacGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGcc                                                >  1:1204461/1‑105 (MQ=255)
                                                                                                                                           actacGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCAAAACGgtgt  >  2:1561050/1‑150 (MQ=255)
                                                                                                                                            ctacGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTgg                                                                   <  2:132799/84‑1 (MQ=255)
                                                                                                                                            ctacGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTgg                                                                   >  1:132799/1‑84 (MQ=255)
                                                                                                                                            ccacGCTGGAGCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCAAAACGgt    >  2:1015381/3‑147 (MQ=255)
                                                                                                                                            ccacGCTGGAGCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCAAAACGgt    <  1:1015381/145‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                            
AGTCCACTGGTGATGGTGATCGTGGGCATGCTGGTGTTCACCTTCGGCTTCTTTGGTGCGCACTCGGTGGCCAGCAGCTGGATCGGCCGCCGGGCGCTGAAGGCCAAGGGGCAGGCGTCGTCGCTGTACCTGTTCTGCTACTACGCTGGCTCCAGCGTGGCCGGTACGGCGGGCGGGGTGTTCTGGCACCAGTGGGGCTGGAACGG‑GATCGGGCTGTTCATTGGCAGCTTGCTGGCGGTGGCCTTGATGGTGGCGTTGCACCTGAGCAAGTTGCCACCCAAAACGGTGT  >  NC_002947/5789887‑5790175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑