Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,740,5270AT39.8% 66.2 / 116.0 124intergenic (+36/+35)hutF/PP_5037formiminoglutamate deiminase/lipocalin family lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (18/44);  new base T (19/22);  total (38/86)
Fisher's exact test for biased strand distribution p-value = 9.40e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-03
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTC  >  NC_002947/5740378‑5740676
                                                                                                                                                      |                                                                                                                                                       
cAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCaa                                                                                                                                                         <  2:5030784/150‑1 (MQ=255)
    tGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGccc                                                                                                                                                     <  1:5197718/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCACTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  2:3376423/150‑1 (MQ=39)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGTAAGCCCGCGaa                                                                                                                                                <  1:3319615/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                                <  1:4327495/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                                <  2:2041048/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                                <  2:4776505/150‑1 (MQ=255)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  2:3098884/150‑1 (MQ=39)
         gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  1:2853460/150‑1 (MQ=39)
          ctgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  2:4930818/149‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                               <  1:943376/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  1:2173962/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  1:2698135/150‑1 (MQ=255)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  1:3784909/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  2:5037775/150‑1 (MQ=39)
          aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAg                                                                                                                                               <  2:229577/150‑1 (MQ=39)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGAAgg                                                                                                                                              <  2:71984/150‑1 (MQ=255)
           tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAgg                                                                                                                                              <  1:2974167/150‑1 (MQ=39)
            gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAACCCTTCGCGGGCTTGCACGCGAAggg                                                                                                                                             <  1:1528726/150‑1 (MQ=39)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                           <  1:1903628/150‑1 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGtt                                                                                                                                           <  1:4577755/150‑1 (MQ=255)
              gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                           <  2:2550333/150‑3 (MQ=255)
               aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg                                                                                                                                          <  1:4664698/150‑1 (MQ=255)
                 ggTGAATGGGCACTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑c‑a                                                                                                                                      <  2:4995805/150‑1 (MQ=255)
                 ggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑c‑a                                                                                                                                      <  2:190294/150‑1 (MQ=255)
                 ggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑c‑a                                                                                                                                      <  2:5339639/150‑1 (MQ=255)
                 ggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGATTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑c‑a                                                                                                                                      <  2:5339651/150‑1 (MQ=255)
                  gTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAGGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg‑c‑aa                                                                                                                                     <  1:1264115/150‑1 (MQ=255)
                       tGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                               <  1:2142414/137‑1 (MQ=255)
                       tGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                               >  2:2142414/1‑137 (MQ=255)
                        gggCTAGGGGTGGTGCGCCTGGGGCGGCTTGCCCAGGAAGATGAACGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGAAAGCCCGCGAAGGGTTg‑c‑aacgcaac                                                                                                                               <  2:3781945/150‑1 (MQ=255)
                        gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGATGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCTAGCCCGCGATGGGTTg‑c‑aacgcaac                                                                                                                               <  2:2613218/150‑1 (MQ=255)
                        gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGGGTT‑TGAGGCCGTGGCGTGCCAGGCCGCGGACGGGTg‑g‑aacgcgaa                                                                                                                               >  2:4392472/1‑147 (MQ=255)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  1:3554531/118‑1 (MQ=38)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  1:3554830/118‑1 (MQ=38)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                >  2:3554531/1‑118 (MQ=38)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                >  2:3554830/1‑118 (MQ=38)
                                         ccAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGGGCTTGCACGCGaa                                                                                                                                                <  1:3554586/118‑1 (MQ=38)
                                                cggctggCCCAGGACGATGAAAGGGGGCGGGCGTTTGCCACGGTGTGGCGCCAGCTTTTGGGCTGAGCGTACGGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCTAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTa                                                                                                       <  2:3500469/144‑1 (MQ=255)
                                                         cAGGAAGATTAAAGCGGGCGGGCGTTTGCAATGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑CCCGCCCTACGCGTGAAACCCCGCCAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCt                                                                                              <  2:4154208/150‑1 (MQ=255)
                                                          aGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGGT‑GCAGCCCGACGCGGGGCAGCCCCCCAAGGGTGG‑C‑AACCCCAACCCCAAAAACACACTGCCGTTTTACAATTTTCTg                                                                                             >  2:4436489/1‑150 (MQ=255)
                                                             aaGATGAATGCGGGGGGGCGTTTGCCAAGGTGTTGCGCCACCTTTTGGGCTGAGCGAACCGGGGTTGCGTT‑GCAGCCCTCCGCGTGCACGCCCGCGAAGGGTTG‑A‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATc                                                                                          <  2:3824938/150‑1 (MQ=255)
                                                              aGATGAACGCGGGCGGGCTTTGGCAACGTTTTTGCGACAGATTTTGGGCTGCGCGTCCGGGGGTTGCGTG‑GCCGCCGGGCGGGTGCAAGCCCGCGTCGGGTTG‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCg                                                                                         <  2:100893/150‑1 (MQ=255)
                                                                        ggggggggGTTTGCCACGGTGTTGCGCCCGCTTTTGGGCTGTGCGTCCGGGGGTGGCGTT‑GCCCCCCTTCGCGGGCACGCCCGCTATGGTTTG‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcccgcc                                                                               <  1:2623314/150‑1 (MQ=255)
                                                                            gggcgTTTGCCATGGTGTTGCGCCTGGTTTTGGGCTGAGCGTACGGGGGTTGCGTG‑GCCGCCCTTCGGGTGCAAGCCCGCGATGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                           <  1:4906937/150‑1 (MQ=255)
                                                                            gggcgTTGGCCTCGGTGTTGCGCCCGCTTTGGGGGTGCGCGTACGGGGTTTGGGTG‑GCAGCCCGTCGCGTGCACGCCCGCGACGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                           <  1:4906856/150‑1 (MQ=255)
                                                                               cgTTGGCCATGGTGTTGCGCCTGCTTTTGGGCTGAGCGTACGGGGGTTGCTTT‑GCAGCCCTTCGGTTGCATGCCCGCTACGGTTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCaa                                                                        <  1:4436489/150‑1 (MQ=255)
                                                                                      catggTGTTGCGCCAGCTTTGGGGCGGCGCGTACGGGGGTTGCTTT‑GCCGCCCTTCGGGTGCACGCCCGCGATGGGTTG‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTg                                                                 <  1:2117622/147‑1 (MQ=255)
                                                                                        tggTGTGGCGCCCGCTTTTGGGGTGAGGTTCCCGGGGTGGGTTG‑GCAGCCGTTCGGGTGAACGCCGGCTCTGGGTTG‑A‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgt                                                               <  1:3915446/149‑1 (MQ=255)
                                                                                            gtggcgcCAGCTTTTGGGCTCAGCGTACGGGGGTTGCGTT‑GCAGCCCTACGCGTGCAAGCCCGCGATGGGTTG‑A‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCa                                                           <  1:4375722/147‑1 (MQ=255)
                                                                                                 gcCAGCTTTTGGGCTGAGCGTACCGGGGTGGCGTT‑GCAGCCCTTGGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAccc                                                      <  2:3446645/150‑1 (MQ=255)
                                                                                                          tGGGCTGCGGGTCCGGGGGTTGGGTT‑GCCGCCCTGCGCGTGCACGCCCGCGAGGGTTTG‑A‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcg                                             <  2:461393/150‑1 (MQ=255)
                                                                                                           gggCTGCGCGTACGGGGGTTGCGTT‑GCAGCCGTGCGCGTGAAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                            <  1:4819902/150‑1 (MQ=255)
                                                                                                           gggCTGAGCGTACCGGTGTTGCGTT‑GAACCCCTTCGCGTGCAACCCCGCCAAGTTTTG‑A‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcgc                                            <  2:1026499/150‑1 (MQ=255)
                                                                                                              cTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGAAAGCCCGCCAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGcc                                         <  2:4707266/150‑1 (MQ=255)
                                                                                                                gcgCGTCCGGGGGTGGCGTG‑GCCGCCCTGCGCGTGCACCCCCCCTAGGGGTTC‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt                                       <  1:778433/148‑1 (MQ=255)
                                                                                                                  cgggtcgggggGTGGGTTGGCAGCCTTGCGCGCCCACGCCCGCTATGGTTCC‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTg                                      <  1:4023557/143‑1 (MQ=255)
                                                                                                                       cgggggTTGGGTT‑GCAGCCGTTCGCGTGCCCGCCGGCGAGGGGGTG‑C‑ACCGCAACCCCAAAAACCTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc                                <  2:3208862/148‑1 (MQ=255)
                                                                                                                       cgggggTTGCGTG‑GCCGCCGTGCGCGTGCACGCCCGCGACGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc                                <  2:3208910/148‑1 (MQ=255)
                                                                                                                        gggggGTGCGTC‑GCACCCCTGCGGGTGCCCCCCGGCG‑TGGGTTGCC‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca                               <  1:674760/149‑1 (MQ=255)
                                                                                                                        cGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCTATGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagca                               <  2:1176883/150‑1 (MQ=255)
                                                                                                                         ggggTGGCTTT‑GCCGCCGTCCGGGTGC‑ACCCCGGGTAGGGTTT‑CAAACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  1:3404458/150‑1 (MQ=255)
                                                                                                                         ggggTGGCGTG‑GCAGCCCTTCGCGTGCAAGCCCGCGACGGTTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagcag                              <  2:1118216/150‑1 (MQ=255)
                                                                                                                          gggTGGGGTT‑GCCCCCCTCGGCGGCCACGCCCGCGCTGGGGGC‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                             <  1:2484225/150‑1 (MQ=255)
                                                                                                                          gggTGGCGTG‑GCCGCCCTGCGCGGCCACCCCCGCGAGGGGTCC‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                             <  1:2484236/150‑1 (MQ=255)
                                                                                                                               gcgtt‑gcAGCCCTTCGCGTGCAAGCCCGCGACGGGTTG‑C‑ACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                        <  2:4820864/150‑1 (MQ=255)
                                                                                                                               gcgtt‑gcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                        >  1:1653501/1‑150 (MQ=255)
                                                                                                                                cttt‑gcCGCCTTTGGGGTGCAACCCGGCTATGGTTTC‑A‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                       <  1:560107/148‑1 (MQ=255)
                                                                                                                                cgtt‑gcCGCCCGTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCa                       <  2:2339644/150‑1 (MQ=255)
                                                                                                                                 gtt‑gcAACCCTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAATACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                      >  2:789938/1‑150 (MQ=38)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAATCTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGGGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                  >  2:3965916/4‑150 (MQ=38)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                  >  1:1819483/4‑150 (MQ=38)
                                                                                                                                      caacccTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                  >  2:3966185/4‑150 (MQ=38)
                                                                                                                                      cAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc                  <  2:3971855/150‑1 (MQ=255)
                                                                                                                                       cgCCGTTCGGGTGCACCCCGGCGATGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 <  1:2463065/149‑1 (MQ=255)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  1:3372041/3‑150 (MQ=255)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  1:4578786/3‑150 (MQ=38)
                                                                                                                                       aacccTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  1:3058518/3‑150 (MQ=38)
                                                                                                                                       aGCCCTTCGCGTGCACGCCCGCGATGGTTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 <  2:2516282/150‑1 (MQ=255)
                                                                                                                                       aGCCCTTCGCGTGCACGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAACACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCGGGTGTCATACCCCTGCTGCCGCGCCCGGGACAGCAGGTTCTCACGCTcc                 >  2:3265084/1‑150 (MQ=255)
                                                                                                                                       aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  2:82632/1‑150 (MQ=255)
                                                                                                                                       aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 >  2:2370855/1‑150 (MQ=255)
                                                                                                                                       aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc                 <  2:2632245/150‑1 (MQ=255)
                                                                                                                                        acccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTccc                >  2:1098225/2‑150 (MQ=255)
                                                                                                                                         cccTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa               >  2:4300238/1‑150 (MQ=255)
                                                                                                                                         cccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTGATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCa               >  2:1044843/1‑150 (MQ=39)
                                                                                                                                          ccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                              <  2:4538960/118‑1 (MQ=38)
                                                                                                                                          ccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGcc                                              >  1:4538960/1‑118 (MQ=38)
                                                                                                                                          ccTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAg              >  1:1338621/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  1:4664593/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  1:3948905/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  1:4369458/1‑150 (MQ=255)
                                                                                                                                           cTTCGCGGGCTTGCACGCGAAGGGCTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg             >  2:4968881/1‑150 (MQ=39)
                                                                                                                                            ttCGCGTGCACGCCCGCTAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc            <  2:1870826/150‑1 (MQ=255)
                                                                                                                                            ttCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc            >  1:1085000/1‑150 (MQ=255)
                                                                                                                                            ttCGCGGGCTTGCACGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGc            >  1:2260696/1‑150 (MQ=255)
                                                                                                                                             tCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGcc           >  2:1693216/1‑150 (MQ=255)
                                                                                                                                                 gTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa       >  2:829312/1‑150 (MQ=255)
                                                                                                                                                    cAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtg    >  1:2238813/1‑150 (MQ=255)
                                                                                                                                                    cAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAgtg    >  1:1369854/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                       
CAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTGCGTT‑GCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTG‑C‑AACGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCAGTGTC  >  NC_002947/5740378‑5740676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑