New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5125125 =	47 (1.250)	11 (0.310)	9/252	2.7	23.2%	intergenic (+51/‑131)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5125224 =	29 (0.820)					intergenic (+150/‑32)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease

TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5125282‑5125125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggcaCTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTCG  >  NC_002947/5125224‑5125367                                                                                                                                                                                                                                                                                                                TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGAGTTTACCCGAGAAGG                                                                                                                                                          <  2:245578/150‑1  GCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATACTGGAGGAGCGGGTTTACCCGCGAAGGG                                                                                                                                                         <  1:217892/150‑1    GCCGAGGGCGGTGCGGTGGTTCATGGTGAGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGC                                                                                                                                                       <  2:438413/150‑1                                         TGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGC                                                                                                                                                       <  1:838042/113‑1                                         TGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGGAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGC                                                                                                                                                       >  2:838042/1‑113                                                               CGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAG                                                                                                                          <  1:378136/120‑1                                                               CGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAG                                                                                                                          >  2:378136/1‑120                                                                         GCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCA                                                                                  >  2:251301/1‑150                                                                                  CCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGC                                                                         >  1:86034/1‑150                                                                                    CGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGC                                                                       >  1:337284/1‑150                                                                                    CGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGC                                                                       >  1:337480/1‑150                                                                                         CTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACCTTGGCGCGCTtctc                                                                  >  2:346513/1‑146                                                                                              GGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGG                                                             <  2:337284/150‑1                                                                                              GGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGG                                                             <  2:337480/150‑1                                                                                                  TTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCTCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTT                                                         >  2:160400/1‑150                                                                                                                                    GCGGGTTTACCCGCGAAGGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACACTGGCGCTCTGTCCGTCGTCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCA                       <  1:160400/150‑1                                                                                                                                                      GGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCT     >  1:174426/1‑150                                                                                                                                                         CCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTCG  <  1:14665/150‑1                                                                                                                                                                                                                                                                                                                TGCGCCGAGGGCGGTGCGGTGGTTCATGGTGGGTCCTTGATGGAGATCTCTACAGGCAGTGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGTTTTGCACAACATTCAGGCGGGGGCATCCTGTAGGAGCGGGTTTACCCGCGAAGGGGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5125282‑5125125 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggcaCTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCGTCTTCG  >  NC_002947/5125224‑5125367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.