| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 499197 = | 37 (0.980) | 9 (0.290) | 9/222 | 2.3 | 23.0% | intergenic (+38/‑258) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| ? | NC_002947 | 499284 = | 30 (0.970) | intergenic (+125/‑171) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein | |||||
CGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCC > NC_002947/499050‑499341 | tgcgtaggcaaaagagtagaagagacgcaagcgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagagatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaacct‑‑gt < 2:400758‑M1/3‑1 (MQ=255) gcTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAt‑‑gtg < 2:867629/150‑1 (MQ=255) cgtaggcaaaagagtagaagagacgcaagcgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTgg > 1:128642‑M1/146‑150 (MQ=255) cTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTgg < 1:812318/150‑1 (MQ=255) cTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTgg < 1:275219/150‑1 (MQ=255) gcaaaagagtagaagagacgcaagcgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCg < 2:321024‑M1/10‑1 (MQ=255) gAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAACCCTAT‑‑GTGAGAGCg > 2:752080/1‑150 (MQ=255) aGCAAGACCATCAGCACTCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCgg > 1:496463/1‑150 (MQ=255) aGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCgg > 2:165818/1‑150 (MQ=255) tagaagagacgcaagcgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGccc < 2:796145‑M1/19‑1 (MQ=255) cAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCcgcg > 2:458201/1‑150 (MQ=255) cACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAAc > 1:104641/1‑150 (MQ=255) ccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACggg > 1:754729/1‑150 (MQ=255) cgcccgaaaatcgggggtactgagagaatgccatcatccggatggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGggcctggc < 1:186110‑M1/34‑1 (MQ=255) cACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGggcctggcct > 1:520609/1‑150 (MQ=255) ggggaGAAGTTGAAAGTGAGCTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGAtct < 1:700586/146‑1 (MQ=255) aTGCAGAAGGTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCTATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGGAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGAtct < 2:213380/150‑1 (MQ=255) aGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTAt > 2:698214/1‑150 (MQ=255) aaGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATgg > 1:895328/1‑150 (MQ=255) tGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGggc > 2:793583/1‑110 (MQ=255) tGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGggc < 1:793583/110‑1 (MQ=255) tGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcgcg < 2:895328/150‑1 (MQ=255) tGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcgcg < 1:458201/150‑1 (MQ=255) ggCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:698214/150‑1 (MQ=255) ccggatggaagatttgttgtagggatcgccctacaagtatggcgggattggaatgccgttgcgagccaaccacgaaaccTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTcgcg > 2:574121‑M1/80‑150 (MQ=255) tggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGc < 2:422494‑M1/76‑1 (MQ=255) ggaagatttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGcc > 2:186110‑M1/74‑150 (MQ=255) atttgttgtagggatcgccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTc > 1:422494‑M1/69‑150 (MQ=255) aCGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCcaca < 2:520609/150‑1 (MQ=255) cGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCctgct < 2:731727/101‑1 (MQ=255) cGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCctgct > 1:731727/1‑101 (MQ=255) ccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg < 1:517167‑M1/70‑1 (MQ=255) ccctacaaggatggcgggattggaatgcccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 2:517167‑M1/52‑121 (MQ=255) atTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGc > 2:565513/1‑150 (MQ=255) cGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTc < 1:565513/150‑1 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGAtct > 1:568239/1‑77 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGAtct < 2:568239/77‑1 (MQ=255) gACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTcc > 1:45949/1‑150 (MQ=255) cccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCggg < 1:55704‑M1/71‑1 (MQ=255) cccttgcgagccaaccacgaaaccT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCggg > 2:55704‑M1/25‑95 (MQ=255) ccGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 1:400873/1‑150 (MQ=255) ccGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 2:163274/1‑150 (MQ=255) gAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 2:400873/150‑1 (MQ=255) gAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGACACATGCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCtt < 1:752080/150‑1 (MQ=255) cTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCTTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAg < 2:104641/150‑1 (MQ=255) cGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCGTGCAGCAGATCGGCGTT‑GCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAgggatc > 2:482925/1‑147 (MQ=255) gAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATATATCAGAATCAACAACGCCCCACACGGGGCCGCCGCCGCGCACAG‑ATTGGGTGGGTGTCGCGTAGGGGCATTCCAATCCCGCCATCCTTGTAGGGCGAt > 2:561732/1‑150 (MQ=255) gCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATccc > 1:796145/1‑150 (MQ=255) cTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGtt > 2:481618/1‑102 (MQ=255) cTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGtt < 1:481618/102‑1 (MQ=255) | CGCTGTCGAGCAAGACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAGCTGGTGAAGTACGCCATGGAGCACAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTAT‑‑GTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAG‑GTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCC > NC_002947/499050‑499341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |