New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1799915	52 (1.380)	6 (0.190)	6/224	3.2	12.6%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799957	40 (1.280)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCGCTG  >  NC_002947/1799813‑1800106                                                                                                                                                  |                                                                                                                                                      ttCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCg                                                                                                                                                  >  2:271482/1‑150 (MQ=255) ttCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCg                                                                                                                                                  >  2:70596/1‑150 (MQ=255)              gggcggCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGa                                                                                                                                     >  1:131524/1‑150 (MQ=255)              gggcggCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGa                                                                                                                                     >  2:790827/1‑150 (MQ=255)               ggcggcTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTA‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGaa                                                                                                                                    <  2:887988/150‑1 (MQ=255)                    cTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCt                                                                                                                               <  2:131524/150‑1 (MQ=255)                         gAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCaaa                                                                                                                          >  2:852147/1‑150 (MQ=255)                          aaGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAag                                                                                                                         <  1:852147/150‑1 (MQ=255)                          aaGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTAACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCCAag                                                                                                                         >  1:840928/1‑150 (MQ=255)                           aGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAagc                                                                                                                        >  1:384342/1‑150 (MQ=255)                           aGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAagc                                                                                                                        <  1:574341/150‑1 (MQ=255)                              ccgcgAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACCGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAagcagc                                                                                                                     <  1:622673/149‑1 (MQ=255)                                gcgAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGccc                                                                                                                   <  1:373681/150‑1 (MQ=255)                                       cGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCaaaaaa                                                                                                            <  2:641354/150‑1 (MQ=255)                                         tCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGccc                                                                                                                                         <  1:492241/119‑1 (MQ=255)                                         tCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGccc                                                                                                                                         >  2:492241/1‑119 (MQ=255)                                          cACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGc                                                                                                         <  2:704595/150‑1 (MQ=255)                                           aCCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCCCGCCCGCTCTCACCGGCTTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGCAGCGGGCGTGCCCGCGACGGGCTGCCAAGCAGCCCCCACACAAGcc                                                                                                        >  2:44542/1‑150 (MQ=38)                                               gtgcgctgagctgagCTAGGGGGGTGGCGTCGGGGCCGTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTa                                                                                                    <  1:44542/145‑1 (MQ=37)                                                   ccTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTa                                                                                                >  2:158609/1‑150 (MQ=255)                                                   ccTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTa                                                                                                >  2:499987/1‑150 (MQ=255)                                                    cTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCTGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAg                                                                                               >  1:759312/1‑150 (MQ=255)                                                    cTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAg                                                                                               >  1:702000/1‑150 (MQ=255)                                                       aTCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCt                                                                                            <  1:70596/150‑1 (MQ=255)                                                            aCCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAAt                                                                                       >  1:276117/1‑150 (MQ=255)                                                            aCCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAAt                                                                                       >  2:894979/1‑150 (MQ=255)                                                             ccTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATc                                                                                      <  1:790827/150‑1 (MQ=255)                                                                 ttGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGc                                                                                  >  1:126296/1‑150 (MQ=255)                                                                      gCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGccc                                                                                                                   <  1:528182/112‑1 (MQ=255)                                                                      gCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGccc                                                                                                                   >  2:528182/1‑112 (MQ=255)                                                                         gCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGccc                                                                                                       >  2:757780/1‑121 (MQ=255)                                                                         gCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGccc                                                                                                       <  1:757780/121‑1 (MQ=255)                                                                         gCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTa                                                                                           <  1:117963/133‑1 (MQ=255)                                                                         gCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTa                                                                                           >  2:117963/1‑133 (MQ=255)                                                                          cTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGt                                                                         <  2:702000/150‑1 (MQ=255)                                                                                  cccTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACt                                                                 <  2:125107/150‑1 (MQ=255)                                                                                     ttCGCGGGCACGCCCGCTCTCACAGGATTCATCGG‑CTGTACTGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCt                                                              <  1:735112/150‑1 (MQ=38)                                                                                                  ccGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGccc                                                                                                       <  2:100050/96‑1 (MQ=255)                                                                                                  ccGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGccc                                                                                                       >  1:100050/1‑96 (MQ=255)                                                                                                  ccGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTc                                                                           >  2:635763/1‑124 (MQ=255)                                                                                                  ccGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTc                                                                           <  1:635763/124‑1 (MQ=255)                                                                                                             ggATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTccc                                      <  2:276117/150‑1 (MQ=255)                                                                                                                    tCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTc                               >  2:322044/1‑150 (MQ=255)                                                                                                                       gTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCAcc                            >  1:400984/1‑150 (MQ=255)                                                                                                                                     ggCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTc               >  2:815172/1‑150 (MQ=255)                                                                                                                                        cGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGa            >  1:807134/1‑150 (MQ=255)                                                                                                                                                  ggAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCGCTg  <  2:384342/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCTCACAGGATTCATCGGTCTG‑AGCGGCGGGGCCGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAAAAAAAGCCCCTAGTTAGGCTACAATCCCGCCCTTGTCGTTAAGCACTGCTACAGGATCTTCCATGTCGGTTCCCTTCGTTCACCTGCGCGTCCACTCCGAATTCTCGCTG  >  NC_002947/1799813‑1800106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.