New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2048837 =42 (1.110)8 (0.240) 6/236 3.3 18.7% intergenic (+33/+106) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
?NC_002947 2048928 = 33 (1.000)intergenic (+124/+15) PP_1821/PP_1822 glutathione S‑transferase family protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGG  >  NC_002947/2048784‑2049069
                                                                                                                                                |                                                                                                                                             
cATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCTGGCTCGCCCGCTCCCACAAGGGATCTg                                                                                                                                          >  1:420616/1‑150 (MQ=255)
      ccGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgt                                                                                                                                    >  2:680331/1‑150 (MQ=255)
                         cGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAAc                                                                                                                 <  1:510982/150‑1 (MQ=255)
                                   tCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCTGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCa                                                                                                       <  2:420616/150‑1 (MQ=255)
                                   tCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCa                                                                                                       >  2:702923/1‑150 (MQ=255)
                                    ccAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg                                                                                                      <  1:307657/150‑1 (MQ=255)
                                     cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagtc                                                                                                                               <  1:11195/124‑1 (MQ=255)
                                     cAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCgtcagtc                                                                                                                               >  2:11195/1‑124 (MQ=255)
                                         cgcTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAg                                                                                                 <  1:680331/150‑1 (MQ=255)
                                              gcgcAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTCCCTGGGTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCgatg                                                                                            <  1:16088/150‑1 (MQ=255)
                                                gcAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCgatgat                                                                                          >  1:772872/1‑150 (MQ=255)
                                                      cTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGTCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCTTCCAGGTAAGCGATGATTGCCtt                                                                                    <  1:581737/150‑1 (MQ=255)
                                                       ttGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTg                                                                                   >  2:356168/1‑150 (MQ=255)
                                                         gtgGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa                                                                                 <  1:496295/150‑1 (MQ=255)
                                                             gAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCa                                                                             <  1:805860/150‑1 (MQ=255)
                                                              aGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCAt                                                                            <  1:26811/150‑1 (MQ=255)
                                                              aGCGGGCGTGCCCGCGAACACGGGCGCACCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGCTGATTGCCTTGGACTCAt                                                                            <  1:673390/150‑1 (MQ=255)
                                                               gCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATa                                                                           >  1:651648/1‑150 (MQ=255)
                                                                cGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATAc                                                                          <  2:749168/150‑1 (MQ=255)
                                                                cGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATAc                                                                          <  2:651648/150‑1 (MQ=255)
                                                                  ggCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACAt                                                                        >  1:588279/1‑150 (MQ=255)
                                                                         ccGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAg                                                                    <  2:290247/147‑1 (MQ=255)
                                                                         ccGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCAACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAg                                                                    >  1:290247/1‑147 (MQ=255)
                                                                          cgcgAACACGTGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCa                                                                <  1:235061/150‑1 (MQ=255)
                                                                                       gcAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGcttc                                                   >  1:681654/1‑150 (MQ=255)
                                                                                                   aaCCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAg                                       >  2:854637/1‑150 (MQ=255)
                                                                                                         cgcgGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg                                                                                                      <  2:574904/81‑1 (MQ=255)
                                                                                                         cgcgGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAg                                                                                                      >  1:574904/1‑81 (MQ=255)
                                                                                                                        gcgGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCAATTTCACCCGgcc                  >  1:173624/1‑150 (MQ=255)
                                                                                                                           ggCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGgccgcc               >  2:259372/1‑150 (MQ=255)
                                                                                                                            gCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCa              <  1:854637/150‑1 (MQ=255)
                                                                                                                              tCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa                                                                                 >  2:102598/1‑81 (MQ=255)
                                                                                                                              tCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGa                                                                                 <  1:102598/81‑1 (MQ=255)
                                                                                                                                        ccACAAGGGATCTGCAGCGTCAGTCAGATGGCTGCAAACCGCTCATCCAGGTAAGCAATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAgg  <  1:259372/150‑1 (MQ=255)
                                                                                                                                         cacaAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGgccgc                <  2:327133/135‑1 (MQ=255)
                                                                                                                                         cacaAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGgccgc                >  1:327133/1‑135 (MQ=255)
                                                                                                                                                |                                                                                                                                             
CATGTGCCGATGGTGGGCTGAAAACCGACCTGTTTTCCAGGCGCTTGCGCAATCCTTGTGGGAGCGGGCGTGCCCGCGAACACGGGCGCAGCCCGTGCCAACCACCGCGGTGCCTGCTTCGCGGGCTCGCCCGCTCCCACAAGGGATCTGCAGCGTCAGTCAGATGGCGGCAAACCGCTCATCCAGGTAAGCGATGATTGCCTTGGACTCATACATCCAGGTCACCTTGCCGGCTTCTTCAATGCGCAGGCATGGCACTTTCACCCGGCCGCCACCTTCCTGCAGG  >  NC_002947/2048784‑2049069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.