New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5109281 =	53 (1.060)	10 (0.210)	10/250	3.6	16.8%	intergenic (+85/+54)	PP_4494/aroP‑II	LysR family transcriptional regulator/aromatic amino acid transport protein
	?	NC_002947	5109315 =	49 (1.040)					intergenic (+119/+20)	PP_4494/aroP‑II	LysR family transcriptional regulator/aromatic amino acid transport protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGGAATGAGGCACTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATGTACACCACCAACATTGCAAGCAGCCACACCGGG  >  NC_002947/5109136‑5109428                                                                                                                                                   |                                                                                                                                                     gAGGAATGAGGCACTGCCGTAGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAAc                                                                                                                                                  >  2:1148815/1‑150 (MQ=255)       tGAGGCACGGCCGGCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCggag                                                                                                                                            >  2:940625/1‑147 (MQ=255)        gAGGCACTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGc                                                                                                                                           >  2:922145/1‑150 (MQ=255)          ggCACTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGAAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCa                                                                                                                                         <  2:181118/150‑1 (MQ=255)           gCACTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAg                                                                                                                                        >  1:199573/1‑150 (MQ=255)             aCTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGTAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTc                                                                                                                                      <  1:739696/150‑1 (MQ=255)                gCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACaaaaaa                                                                                                                                                   <  2:874181/134‑1 (MQ=255)                gCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACaaaaaa                                                                                                                                                   >  1:874181/1‑134 (MQ=255)                             gCATTCAGGGGGTGGTTGATGGAGCAGATCTGATTTTTGGGGGGGTCACCTGACCTGAGAGCAACGCTGTACCCGTAGGAGCGGGTTCAACCGC‑GAAAGGGCAAGTACAAAAAAAAAAAAACCCGAAGCCAGTCACCTG‑ACTCTGGGttt                                                                                                                     <  2:997829/150‑1 (MQ=255)                              cATTCAGGGGGTGGTTGCTGGAGGAGAGCTGATTGTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGtttt                                                                                                                    <  2:463088/150‑1 (MQ=255)                                ttCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTca                                                                                                                  <  2:545274/150‑1 (MQ=255)                                 tCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTcac                                                                                                                 <  1:770784/150‑1 (MQ=255)                                      gggTGGTTGCTGGAGCAGATCTGATTTTTGGCGGAGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATAcc                                                                                                            >  1:848563/1‑150 (MQ=255)                                      gggTGGTTGCTGGAGCAGATCTGATTGTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATAcc                                                                                                            >  2:1128459/1‑150 (MQ=255)                                            ttGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTAt                                                                                                      >  2:452707/1‑150 (MQ=255)                                               cTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgc                                                                                                   <  1:766888/150‑1 (MQ=255)                                               cTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgc                                                                                                   <  1:1148815/150‑1 (MQ=255)                                                       gATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCt                                                                                               <  2:773739/146‑1 (MQ=255)                                                       gATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCt                                                                                               >  1:773739/1‑146 (MQ=255)                                                         tCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTg                                                                                         <  1:551525/150‑1 (MQ=255)                                                           tGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGc                                                                                       >  2:162617/1‑150 (MQ=255)                                                              tttttGGCGGGGTCACCTGACCTGAGGGCAACGATGTCTAACACGGTGAGCGGTCACCCGC‑GAAAGGGCCCGGACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCcac                                                                                    >  1:519706/1‑150 (MQ=255)                                                               ttttGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCcaca                                                                                   >  2:358971/1‑150 (MQ=255)                                                                  tGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGtc                                                                                <  2:199573/150‑1 (MQ=255)                                                                    gCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGtctc                                                                              >  2:320002/1‑150 (MQ=255)                                                                    gCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGt                                                                                 <  2:375917/147‑1 (MQ=255)                                                                    gCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGt                                                                                 >  1:375917/1‑147 (MQ=255)                                                                         gacACCTGAACTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCATCCGCTGGGCGCGGTGATCCTGG‑GAGAGAACACTCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAg                                                                         <  1:452707/148‑1 (MQ=255)                                                                              ctgacctgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgc                                                                                                   >  2:523761/1‑119 (MQ=255)                                                                              ctgacctgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgc                                                                                                   <  1:523761/119‑1 (MQ=255)                                                                              ctgacctgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCAccg                                                                    >  2:1182214/1‑150 (MQ=255)                                                                                 acctgaGGGCAACGCTGTACCCGTAGGATCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCAccgccc                                                                 <  2:614536/150‑1 (MQ=255)                                                                                   ctgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgcgc                                                                                                 <  1:1060771/116‑1 (MQ=255)                                                                                   ctgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGgcgc                                                                                                 >  2:1060771/1‑116 (MQ=255)                                                                                    tgaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCa                                                              <  1:358971/150‑1 (MQ=255)                                                                                     gaGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCCTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCAt                                                             <  2:824744/150‑1 (MQ=255)                                                                                         gCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCAc                                                         <  2:848563/150‑1 (MQ=255)                                                                                         gCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCAc                                                         >  2:328829/1‑150 (MQ=255)                                                                                           aaCGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTca                                                                                                                  >  1:420194/1‑91 (MQ=255)                                                                                           aaCGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTca                                                                                                                  <  2:420194/91‑1 (MQ=255)                                                                                           aaCGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCt                                                       <  1:162617/150‑1 (MQ=255)                                                                                           aaCGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCACGTACACCACACCCGACATGAGCTGACAGGC‑CGTGCAGGCGGGGTTGGCACTGATCGCTTAGGGCTCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCt                                                       <  2:1061697/150‑1 (MQ=255)                                                                                              gCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGgc                                                    <  1:922145/150‑1 (MQ=255)                                                                                                tGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGgcga                                                  >  1:757279/1‑150 (MQ=255)                                                                                                       gTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACt                                           <  1:320002/150‑1 (MQ=255)                                                                                                             gCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTgg                                                     >  2:878900/1‑134 (MQ=255)                                                                                                             gCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTgg                                                     <  1:878900/134‑1 (MQ=255)                                                                                                               gggTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATg                                   >  1:1101128/1‑150 (MQ=255)                                                                                                                       ccGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATGTAcaccac                           >  2:452957/1‑150 (MQ=255)                                                                                                                                    ccGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCAccgccc                                                                 <  2:140761/100‑1 (MQ=255)                                                                                                                                    ccGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCAccgccc                                                                 >  1:140761/1‑100 (MQ=255)                                                                                                                                        aCAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATGTACACCACCAACATTGCAagcagc           <  2:519706/150‑1 (MQ=255)                                                                                                                                                 aaaaaaCCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATGTACACCACCAACATTGCAAGCAGCCACACCggg  >  1:97973/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GAGGAATGAGGCACTGCCGTCGCTGCGGGCATTCAGGGGGTGGTTGCTGGAGCAGATCTGATTTTTGGCGGGGTCACCTGACCTGAGGGCAACGCTGTACCCGTAGGAGCGGGTTCACCCGC‑GAAAGGGCCCGTACAGGCAACAAAAAACCCGAAGCCAGTCACCTG‑ACTCCGGGTTTTCACATACCGCCTATGGCGCCTTACTTGGCCACAGTCTCAACAGCACCGCCCGCATTCACCTGGCGACGCGACTTGACCATGTACACCACCAACATTGCAAGCAGCCACACCGGG  >  NC_002947/5109136‑5109428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.