| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 243,934 | Δ1 bp | 12.0% | coding (237/663 nt) | fkl ← | FKBP‑type peptidyl‑prolyl cis‑trans isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 243,934 | 0 | T | . | 12.0% | 143.2 / 14.8 | 50 | coding (237/663 nt) | fkl | FKBP‑type peptidyl‑prolyl cis‑trans isomerase |
| Reads supporting (aligned to +/- strand): ref base T (17/27); new base . (3/3); total (20/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
GCCTGCCTGCAATTCGCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCTGGCGCAGGCGTTCACCCAGGCTGGCACCCAGGCTGTAGGCCAAATCGTGG > NC_002947/243787‑244081 | gcctgcctGCAATTCGCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCActgc < 1:568544/150‑1 (MQ=255) tgcctgcAATTCGCTGTACAGCACACCTTCCGTTAGTTCTTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCActgcctg > 1:100446/1‑150 (MQ=255) gcctgcAATTCGCTGTACAGCACACCTNCCGTTAGTTCGTNCACCCCNTNACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCActgcctgc > 1:696950/1‑150 (MQ=255) aaTTCGCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTCGCCATTAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCGGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑Gt > 2:174802/1‑150 (MQ=255) gCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCa < 1:1069130/140‑1 (MQ=255) gCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCa > 2:1069130/1‑140 (MQ=255) gCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCtt < 1:1211800/150‑1 (MQ=255) cTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCGGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTTGCTGCATGC‑GTGCCTTg < 2:315443/150‑1 (MQ=255) tGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGt < 2:603597/150‑1 (MQ=255) gTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTc < 1:429371/150‑1 (MQ=255) gTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTc < 1:985558/150‑1 (MQ=255) tACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCg > 1:723286/1‑150 (MQ=255) tACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCg > 2:1090824/1‑150 (MQ=255) aCAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGa < 2:723286/150‑1 (MQ=255) ccTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAgg < 2:777850/150‑1 (MQ=255) cTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAg > 1:1106288/1‑148 (MQ=255) cTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAg < 2:1106288/148‑1 (MQ=255) ccGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGtt < 2:310674/150‑1 (MQ=255) cGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCCGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTg > 2:392781/1‑150 (MQ=255) gTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGc > 1:285756/1‑150 (MQ=255) ttCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCa > 1:747044/1‑116 (MQ=255) ttCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCa < 2:747044/116‑1 (MQ=255) tCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGa < 2:285756/150‑1 (MQ=255) tGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCTTTGTCGAGTTTCAGGGGTTGCCCCTGATAg < 2:976002/150‑1 (MQ=255) tGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAg < 2:910696/150‑1 (MQ=255) aCCCCCTACCGCCCCCGTTCGTTCGCCCTGACACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGCTAGGAc < 2:10322/150‑1 (MQ=255) ccATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTc < 2:1202430/119‑1 (MQ=255) ccATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTc > 1:1202430/1‑119 (MQ=255) aaCGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑Gt < 2:426087/107‑1 (MQ=255) aaCGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑Gt > 1:426087/1‑107 (MQ=255) aCGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGa > 1:145768/1‑135 (MQ=255) aCGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGa < 2:145768/135‑1 (MQ=255) gTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCTCCTGATAGGa > 2:762560/1‑133 (MQ=255) gTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCTCCTGATAGGa < 1:762560/133‑1 (MQ=255) cATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCa < 1:1090824/150‑1 (MQ=255) gCCATGAAACGCGTTTCGGCGGCCTGCAGCGTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCa > 2:1154941/1‑150 (MQ=255) ccATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCAt > 2:261770/1‑150 (MQ=255) aTGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATcc > 2:1123369/1‑150 (MQ=255) tttCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGt > 1:872515/1‑98 (MQ=255) tttCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGt < 2:872515/98‑1 (MQ=255) cggcggCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTg < 2:696950/150‑1 (MQ=255) gcggcCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGc < 2:42997/150‑1 (MQ=255) ggcCTGCAGCTTTTGCGCGGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCAt < 1:174802/150‑1 (MQ=255) gCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCt < 1:1123369/150‑1 (MQ=255) tttGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCTGGCGCa < 1:392781/150‑1 (MQ=255) cgTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCTGGCGCAGGCGTTCACCCa < 2:100446/150‑1 (MQ=255) gacaagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGAc < 2:502773‑M1/70‑1 (MQ=255) gacaagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGAc > 1:502773‑M1/7‑76 (MQ=255) caagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGc > 1:808161‑M1/5‑87 (MQ=255) caagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGc < 2:808161‑M1/83‑1 (MQ=255) caagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGc < 2:808213‑M1/83‑1 (MQ=255) caagGCAC‑GCATGCAGGCAGTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGc > 1:808213‑M1/5‑87 (MQ=255) ACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCTGGCGCAGGCGTTCACCCAGGCTGGCACCCAGGCTGTAGGCCAAATCGTgg > 1:261770‑M1/1‑150 (MQ=255) | GCCTGCCTGCAATTCGCTGTACAGCACACCTTCCGTTAGTTCGTGCACCCCATAACGCCCACGTTCATTAGCCATGAAACGCGTTTCGGCGGCCTGCAGCTTTTGCGCAGCGGCGTCACCTTCCTGGGCTTCATGCTGCTGCAGCACTGCCTGCATGC‑GTGCCTTGTCGAGTTTCAGGGGTTGCCCCTGATAGGACTGCTTCAGGCCTTCGACCAGTGCATCCAGCTGCAAGCCTGGCATCTCCTGGCGCAGGCGTTCACCCAGGCTGGCACCCAGGCTGTAGGCCAAATCGTGG > NC_002947/243787‑244081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |