| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,241,968:1 | +T | 8.9% | intergenic (+27/+31) | grxD → / ← bfr‑II | monothiol glutaredoxin/bacterioferritin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,241,968 | 1 | . | T | 8.9% | 163.5 / 11.1 | 45 | intergenic (+27/+31) | grxD/bfr‑II | monothiol glutaredoxin/bacterioferritin |
| Reads supporting (aligned to +/- strand): ref base . (21/20); new base T (2/2); total (23/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 | |||||||||||
AACTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTCGA > NC_002947/1241820‑1242114 | aaCTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATGAAAAAACCcgc‑g < 2:1044375/150‑1 (MQ=255) cTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GAt > 1:621847/1‑150 (MQ=255) cGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCNTGATCTTCCGGCAAGCATAAAAAAACCCGCTGATC‑GCGGGtttt < 1:973242/150‑1 (MQ=255) gAGCTGTTTGGCGACAGCGCCATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGTCTTCCAAGTCCAAGGCTTCTGAAGCTTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTa < 1:61445/150‑1 (MQ=255) aGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTAt < 2:944719/150‑1 (MQ=255) gCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATg > 1:82650/1‑150 (MQ=255) gTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGCTGATC‑GCGGGTTTTTTTAt < 2:434996/145‑1 (MQ=255) gTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGCTGATC‑GCGGGTTTTTTTAt > 1:434996/1‑145 (MQ=255) gTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGc > 2:264760/1‑150 (MQ=255) cggcAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATa < 2:621847/150‑1 (MQ=255) aGCGACATCATCCAGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTa < 1:264760/150‑1 (MQ=255) aCATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTa > 2:635177/1‑131 (MQ=255) aCATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTa < 1:635177/131‑1 (MQ=255) gTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACt > 2:965615/1‑150 (MQ=255) ttCGAGAAGGGTGAGCTGCAAACCCTGATCAGGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTg > 1:26770/1‑150 (MQ=255) ttCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTTCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGGTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATATGCGAcgg > 1:1053650/1‑148 (MQ=255) gCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGa < 1:965615/150‑1 (MQ=255) aCCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGAt < 2:1145377/150‑1 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtctc > 2:313021/1‑139 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtctc < 1:313021/139‑1 (MQ=255) cTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCtt > 2:190129/1‑150 (MQ=255) cAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCa > 1:1114260/1‑123 (MQ=255) cAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCa < 2:1114260/123‑1 (MQ=255) gcgGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGccc > 1:254692/1‑150 (MQ=255) ggCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCa > 1:793647/1‑150 (MQ=255) ggCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCa < 2:82650/150‑1 (MQ=255) ggCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCa > 2:1051533/1‑150 (MQ=255) gCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAg > 2:265964/1‑150 (MQ=255) ccaaggccaaggCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTgg < 1:1051533/150‑1 (MQ=255) ccaaggccaaggCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTgg < 2:287579/150‑1 (MQ=255) caaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCgg > 1:923087/1‑61 (MQ=255) caaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCgg < 2:923087/61‑1 (MQ=255) caaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTggg < 2:26770/150‑1 (MQ=255) caaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCAATCAGCCCCAGTTggg > 1:805780/1‑150 (MQ=255) gccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTc > 2:356681/1‑150 (MQ=255) gcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTgg < 1:568827/139‑1 (MQ=255) gcTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTgg > 2:568827/1‑139 (MQ=255) tCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTc < 1:265964/150‑1 (MQ=255) gAAGCCTGATCTTCCGGCAAGCATAAAAACACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAt < 2:1053650/150‑1 (MQ=255) gAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAt < 1:687464/150‑1 (MQ=255) aaGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTg > 2:614720/1‑114 (MQ=255) aaGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTg < 1:614720/114‑1 (MQ=255) tGATCTTCCTGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCtt > 2:1282307/1‑108 (MQ=255) tGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCtt < 1:1282307/108‑1 (MQ=255) aaaaCCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCACCCCAAGATGAGAAAAAAGCCAGTCGATGTGCTCCTCCTCGGACTCGCGGATATc > 2:140945/1‑150 (MQ=255) ccGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTCGa > 2:250499/1‑150 (MQ=255) | AACTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCATAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTCGA > NC_002947/1241820‑1242114 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |