| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,385,274:1 | +G | 8.8% | intergenic (+19/‑44) | lldP → / → lldD | L‑lactate permease/L‑lactate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,385,274 | 1 | . | G | 8.8% | 212.4 / 15.8 | 57 | intergenic (+19/‑44) | lldP/lldD | L‑lactate permease/L‑lactate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base . (25/27); new base G (2/3); total (27/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.19e-01 | |||||||||||
CGGCCTGGTCGGCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACAC > NC_002947/5385126‑5385418 | cGGCCTGGTCGGCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGc‑c > 2:330911/1‑150 (MQ=255) ccTGGTCGGCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGTCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGgcgcgcga > 1:342683/1‑146 (MQ=255) gTCGGCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCTGGCGC‑CGTcgcgc < 1:1257499/150‑1 (MQ=255) ggCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGGCGGGGGC‑CTTCGCGCGcc > 2:277956/1‑150 (MQ=255) aaGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCgg > 1:334985/1‑150 (MQ=255) aaGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCgg > 2:580604/1‑150 (MQ=255) gAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCAc > 1:430723/1‑150 (MQ=255) aTCCGACCTGTTCCGCTTCACCGTCAAGCACAGTCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGCGCGACG‑GCGCCCGGcccct < 2:342683/150‑5 (MQ=255) aCCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCcaca < 2:1027029/150‑1 (MQ=255) gTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGCGCGACG‑GCGCCCGGcccctttc < 1:1272037/144‑8 (MQ=255) gTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGCGCGACG‑GCGCCCGGcccctttc > 2:1272037/1‑137 (MQ=255) gTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCa > 2:858483/1‑150 (MQ=255) ttCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGc < 1:226243/150‑1 (MQ=255) cACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCga < 2:253066/150‑1 (MQ=255) gTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAAt > 2:770182/1‑150 (MQ=255) gCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGCGCGACG‑GCGCCCGGc < 1:17653/119‑1 (MQ=255) gCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGCGCGACG‑GCGCCCGGc > 2:17653/1‑119 (MQ=255) gCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGC‑ACGCTGCGAGAATCCATGATCAtt < 2:665218/150‑1 (MQ=255) ccTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCAtt > 2:420742/1‑150 (MQ=255) ccTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCAtt > 1:775231/1‑150 (MQ=255) tcttgGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGc < 1:218285/150‑1 (MQ=255) tcttcGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGc < 1:556729/150‑1 (MQ=255) tcttcGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGc < 1:330911/150‑1 (MQ=255) ccaccaTCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTAc > 1:1050467/1‑150 (MQ=255) caccaTCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTAcc > 2:345975/1‑150 (MQ=255) caccaTCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTAcc < 2:1050467/150‑1 (MQ=255) caTCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATTGATGATCATTTCTGCCTCTACCGAc < 1:495107/150‑1 (MQ=255) gCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCgcgc > 1:468575/1‑150 (MQ=255) tCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGc < 2:1064107/150‑1 (MQ=255) ccTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTcc < 1:134630/85‑1 (MQ=255) ccTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTcc > 2:134630/1‑85 (MQ=255) cTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAAc < 2:430723/150‑1 (MQ=255) cTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAAc < 1:420742/150‑1 (MQ=255) tCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCaa < 1:1088303/150‑1 (MQ=255) tCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCAAGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCaa > 1:771945/1‑150 (MQ=255) aGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAg < 2:385575/148‑1 (MQ=255) aGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAg > 1:385575/1‑148 (MQ=255) gCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGc > 1:971608/1‑150 (MQ=255) ttACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGccc < 2:558827/150‑1 (MQ=255) ttACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGccc < 2:334985/150‑1 (MQ=255) aCCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCGCTCCCACAAGCAACGCTGCGAGAATCCa < 2:405344/87‑1 (MQ=255) aCCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCa > 1:405344/1‑87 (MQ=255) cGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTc > 1:966421/1‑150 (MQ=255) gCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGAGCGGCTTGCTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCa < 1:719840/150‑1 (MQ=255) cATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCgcgc < 2:154537/113‑1 (MQ=255) cATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCgcgc > 1:154537/1‑113 (MQ=255) aTGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACt > 2:628791/1‑150 (MQ=255) gCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTAc < 1:628791/150‑1 (MQ=255) tGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGAGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGc > 1:1222585/1‑150 (MQ=255) ttCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCTTTCCTGTTCCACTACGCTGa > 2:1144435/1‑150 (MQ=255) tAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCTGCACTCCCACAAACACCACTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGgcggcg > 1:157732/1‑150 (MQ=255) aaGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTcc < 1:1001685/124‑1 (MQ=255) aaGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTcc > 2:1001685/1‑124 (MQ=255) gTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTa < 1:345975/150‑1 (MQ=255) ggggCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTACGCCGa < 2:775231/150‑1 (MQ=255) gggCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTACGCCGAg > 1:184412/1‑150 (MQ=255) gCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGa > 2:561224/1‑75 (MQ=255) gCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGa < 1:561224/75‑1 (MQ=255) gggCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCacac < 1:770182/150‑1 (MQ=255) | CGGCCTGGTCGGCAAGGAATCCGACCTGTTCCGCTTCACCGTCAAGCACAGCCTGTTCTTCGCCACCATCGTCGGCCTGATCACCCTGGTCCAGGCTTACTGGCTGACCGGCATGCTGGTTCATCACTAAAGTGAAAGGGGCCGGGCGC‑CGTCGCGCGCCCGGCACTCCCACAAGCAACGCTGCGAGAATCCATGATCATTTCTGCCTCTACCGACTATCGCGCCGCGGCCCAACGCAAGCTGCCCCCCTTCCTGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACAC > NC_002947/5385126‑5385418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |