| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 41794 | 27 (0.550) | 5 (0.110) | 3/224 | NT | 16.3% | intergenic (+36/‑263) | oprP/PP_0039 | porin P/hypothetical protein |
| ? | NC_002947 | = 41803 | 27 (0.610) | intergenic (+45/‑254) | oprP/PP_0039 | porin P/hypothetical protein | |||||
TACGTCAACGAGGCGGTGAAAGTCAGTGCCAACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/41636‑41794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagccggaagcACGTTGA‑GCGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGGGTCACGATGGCATTGCCGCTGTCGTCGCCCACGGTGTTCTCGTTGTTGTCGGTGCGCACGTTGATGTAGTT < NC_002947/41803‑41666 TACGTCAACGAGGCGGTGAAAGTCAGTGCCAACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCCTCTGATCCCTCTCATCAGTCTGACGTGAGAAA < 2:718995/150‑1 TCAACGAGGCGGTGAAAGTCAGTGCCAACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCG > 2:952248/1‑150 GTGCCAACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCGCAACCCGCTCGGCAGTCTGGCGTGAGAAAGCCGGAAGCACGTTGA‑GCGCTTCCG < 1:349949/150‑1 AACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAA > 1:944855/1‑127 AACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAA < 2:944855/127‑1 CCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCACGTTGA‑GCGCTTCCG > 1:1184549/1‑74 CCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCACGTTGA‑GCGCTTCCG < 2:1184549/74‑1 CCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCC > 1:238689/1‑52 CCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCC < 2:238689/52‑1 TCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGCTCAAC‑GTGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGG < 2:320882/99‑1 TCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGG > 1:320882/1‑99 gtaAGAAAGCCGGAAGCACGTTGA‑GCGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGGGTCACGATGGCATTGCCGCTGTCGTC > 1:1283136/4‑110 GTGAGAAAGCCGGAAGCACGTTGA‑GCGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGGGTCACGATGGCATTGCCGCTGTCGTC < 2:1283136/110‑1 AAAGCCGGAATCACGTTGA‑GCGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGGGTCACGATGGCATTGCCGCTGTCGTCGCCCACGGTGTTCTCGTTGTTGTCGGTGCGCACGTTGATGTAGTT < 1:663044/150‑1 TACGTCAACGAGGCGGTGAAAGTCAGTGCCAACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/41636‑41794‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagccggaagcACGTTGA‑GCGCTTCCGGCTTTCTCACGTCAGACTGATGAGAGGGATCAGAAGACGTATTGCAGGCGGGTCACGATGGCATTGCCGCTGTCGTCGCCCACGGTGTTCTCGTTGTTGTCGGTGCGCACGTTGATGTAGTT < NC_002947/41803‑41666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |