New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 363597 | 68 (1.390) | 6 (0.130) +GCGGGCAC |
6/234 | NT | 9.7% | intergenic (‑112/+55) | lcdH/PP_0303 | L‑carnitine dehydrogenase/dehydrocarnitine cleavage enzyme |
? | NC_002947 | 2237037 = | 51 (1.040) | intergenic (+89/+39) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter |
GCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/363541‑363597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAC > NC_002947/2237037‑2237151 |||||||| GCGGGCATGCCCGCGAACACCGGCGCAGCCGGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGCCCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTC > 1:813248/1‑150 GGCATGCCCGCGAACACCGGCGCAGCCGGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGCCCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGC > 2:1155185/1‑150 GCATGCCCGCGAACACCGGCGCAGCCGGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCG < 1:1136081/132‑1 GCATGCCCGCGAACACCGGCGCAGCCGGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCG > 2:1136081/1‑132 CCGGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGCCCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCA < 2:813248/150‑1 GGTGCCAGCCACCGCGTTGAATTCTTCGCGGGCACGCCCGCTCCCACAGGGCCCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAC < 1:1155185/150‑1 |||||||| GCGGGCATGCCCGCGAACACCGGCACGGCCGGTGCCATCCATCGCGTTGCCTGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/363541‑363597 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAAC > NC_002947/2237037‑2237151 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |