New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	404178 =	67 (1.370)	3 (0.070)	5/228	NT	5.2%	coding (1882/2691 nt)	PP_0337	sensory box protein
	?	NC_002947	404207 =	48 (1.070)					coding (1853/2691 nt)	PP_0337	sensory box protein

GATGTTCGTCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/404335‑404178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtttaccgTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGGGTGCACAA  >  NC_002947/404207‑404355                                                                                                                                                                                                                                                                                                                      GATGTTCGTCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGT                                                                                                                                                               <  2:702805/150‑1      ccgatctCAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTA                                                                                                                                                          <  1:914391/143‑1      TCGTCGACAACCAGCTGATCAACGTCACCGCCTCGTTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTA                                                                                                                                                          <  1:572278/150‑1      TCGTCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTA                                                                                                                                                          <  1:569204/150‑1        GTCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTACC                                                                                                                                                        >  1:1047661/1‑150         TCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTACCG                                                                                                                                                       >  2:720926/1‑150           aACAACCAGCCGATCAACACCACCTCCTCGCTAGGCCTGGCCTGTGCAGCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCTGTAC‑CTGGTGTTTACCGTT                                                                                                                                                     <  2:522987/149‑1            ACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCTGTAC‑CTGGTGTTTACCGTTG                                                                                                                                                    >  1:228809/1‑150                                  CGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCTGTAC‑CTGGTGTTTACCGTTGGCCTTGGCCTTGTGCAATGCAA                                                                                                                              <  2:228809/150‑1                                                                                  CAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGT                                                                                                                                                               >  1:570588/1‑69                                                                                  CAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGT                                                                                                                                                               <  2:570588/69‑1                                                                                           GAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACC‑TGTACCTGGTGTTTACCGTTGGCCTTG                                                                                                                                              >  2:415772/1‑77                                                                                           GAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACC‑TGTACCTGGTGTTTACCGTTGGCCTTG                                                                                                                                              <  1:415772/77‑1                                                                                                                                                       TGTTTACCGTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGG          <  1:59349/150‑1                                                                                                                                                        tTTTACCGTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGGG         <  1:522987/149‑1                                                                                                                                                           TACCGTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGGGTGC      <  2:131817/150‑1                                                                                                                                                             CCGTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGGGTGCAC    >  2:5703/1‑150                                                                                                                                                               GTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTATCGACGAACATCGGCTTGTCGAGGGTGCACAA  >  1:890356/1‑150                                                                                                                                                                                                                                                                                                                      GATGTTCGTCGACAACCAGCTGATCAACGTCACCGCCTCGGTAGGCCTGGCCTGTGCACCGTTGCACGGCGTCGACCCGGCCAGCCTGATGAAGAATGCCGGCCTTGCATTGCACAAGGCCAAGGCCAACGGTAAACACCAGGTA‑CAGGTGTTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/404335‑404178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgtttaccgTTGGCCTTGGCCTTGTGCAATGCAAGGCCGGCATTCTTCATCAGGCTGGCCGGGTCGACGCCGTGCAACGGTGCACAGGCCAGGCCTACCGAGGCGGTGACGTTGATCAGCTGGTTGTCGACGAACATCGGCTTGTCGAGGGTGCACAA  >  NC_002947/404207‑404355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.