| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 511921 | 64 (1.300) | 6 (0.140) | 6/220 | NT | 9.2% | intergenic (+58/‑90) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein |
| ? | NC_002947 | = 511969 | 62 (1.440) | intergenic (+106/‑42) | trpC/PP_0423 | indole‑3‑glycerol phosphate synthase/hypothetical protein | |||||
GTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511765‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGA < NC_002947/511969‑511823 GTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGAATGCGCTAATGAAGCCGGCGATTTTGCCGGCTTTTTTGTACCTGTAATagactat > 1:403327/1‑143 GTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGC < 2:973478/150‑1 GTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGC > 2:878519/1‑150 GAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGG < 1:1277931/150‑1 TTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTTAAC > 1:387187/1‑150 TTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGCAAGCCCGCTCCTACGACAGGGCGCGTACCCGTGT < 2:1095043/150‑1 CAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGG > 2:246033/1‑150 TGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGC < 2:387187/150‑1 TTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGC > 1:576814/1‑97 TTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGC < 2:576814/97‑1 GCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGA < 1:246033/150‑1 CAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTA > 1:700653/1‑93 CAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTA < 2:700653/93‑1 TGGCCTCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCA > 1:1034977/1‑150 GGCCTCTACGCGGGTAAACCCGGCCCTACGAAAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCTGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCAC < 2:560788/150‑1 TCTTCGCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGC < 1:859774/150‑1 GCGGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGG < 1:734084/150‑1 GGGTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGAAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTAATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGA > 1:1038370/1‑150 GTGGGTGAGGCGTTCATGCGCGCCGAGCAGCCTGGCCTGGAATTACAGCGGCTGTTCTTCCCCGAGCAGGTGAAGAAGACTGTTCAGCAACTGGACTGATCAAATGAAGCCGGCGTTTTTGCCGGCTTTTTTGTACCTGTAATGGCCTCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/511765‑511921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcctcttcgcgggTAAACCCGCTCCTACGACAGGGCGCGTACCCGTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCATTACAGGTACAAAAAAGCCGGCAAAAACGCCGGCTTCATTTGATCAGTCCAGTTGCTGAACAGTCTTCTTCACCTGCTCGGGGA < NC_002947/511969‑511823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |