| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 975174 = | 65 (1.330) | 4 (0.100) | 4/210 | NT | 8.2% | intergenic (+20/+149) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase |
| ? | NC_002947 | 975246 = | 35 (0.850) | intergenic (+92/+77) | ycfJ/suhB | flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase | |||||
AGAAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/975341‑975174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtttacccgcgaagaggTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATG > NC_002947/975246‑975389 AGAAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCG > 2:687314/1‑150AGAAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCG > 1:711332/1‑150 GAAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGG < 1:890088/150‑1 AAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGG < 1:1215313/150‑1 AAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGG < 1:687314/150‑1 AAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCAGGTAGACCCGCTCCTACATGGCTCGAATTGCCCCTGTAGGATCGGGTTCACCCc > 1:468715/1‑149 AGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGG > 1:198753/1‑141 AGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGG < 2:198753/141‑1 GCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAA < 2:693586/150‑1 TAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATTGATCGCATTGCCCCTGTAGGATCGGGTTTAACCGCGAAGA > 2:938420/1‑150 AAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAG < 2:319733/150‑1 CGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG < 2:842004/138‑1 CGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG > 1:842004/1‑138 TTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAA < 2:25587/105‑1 TTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAA > 1:25587/1‑105 CCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAA > 1:353955/1‑72 CCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAA < 2:353955/72‑1 ACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCG < 1:582945/123‑1 ACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCG > 2:582945/1‑123 CCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGC > 1:111672/1‑119 CCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGC < 2:111672/119‑1 TTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAG < 1:319733/150‑1 CCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTA > 2:1170386/1‑136 CCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTA < 1:1170386/136‑1 CCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACT > 1:91951/1‑150 CGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTT < 1:693586/150‑1 GCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTG > 1:97872/1‑150 GCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTG < 2:863348/150‑1 CGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGA < 2:91951/150‑1 CGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGA < 1:651804/150‑1 GAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTC < 2:370249/94‑1 GAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTC > 1:370249/1‑94 AAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATG < 1:878573/150‑1 AAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATG < 1:1114062/150‑1 AGAAAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/975341‑975174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtttacccgcgaagaggTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATG > NC_002947/975246‑975389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |